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Report for Sequence Feature Glyma19g02871

Feature Type:gene_model
Chromosome:Gm19
Start:2878074
stop:2879416
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36720AT Annotation by Michelle Graham. TAIR10: HVA22-like protein K | chr4:17307769-17309668 FORWARD LENGTH=200 SoyBaseE_val: 1.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR12300Panther HVA22-LIKE PROTEINS JGI ISS
PTHR12300:SF12Panther HVA22-LIKE PROTEIN JGI ISS
PF03134PFAM TB2/DP1, HVA22 family JGI ISS
UniRef100_Q6NLY8UniRef Annotation by Michelle Graham. Most informative UniRef hit: HVA22-like protein k n=1 Tax=Arabidopsis thaliana RepID=HA22K_ARATH SoyBaseE_val: 5.00E-42ISS
UniRef100_UPI000233DEDCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DEDC related cluster n=1 Tax=unknown RepID=UPI000233DEDC SoyBaseE_val: 4.00E-98ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02871 not represented in the dataset

Glyma19g02871 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g024600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02871.1   sequence type=CDS   gene model=Glyma19g02871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCGCTCGGCATGGTGGATTCAAGTGGCAAAGAGTCAACAAGCTATGCAATGAGGTCAGGGAGTTCGGCGCCGATCTCATCGAGGTCGATGAGCTCGCCTCCGTCTACGATCTCATCGGCGCCGATCTCATCGACGACATTTACCAGAGGTGGTTCGTTGGATTGAGGCTTCTCCTTTCACCCGTTACTTCCAACCTTCTTCTCCGCACAACATGCTGTTCTATAGGGCTTGCGCTTCCCGTGTATTCCACGTTTAAAGCTATTGAGAACAATGACCCATATGAGCAACAAAGGTGCCTATTGTATTGGGCAGCTTATGGTTCTTTTAGTGCTGCAGAAATGTTTGCTGAAAAATTATTTTCCTGGATTCCACTCTATTATCACATGAAGTTTGCATTTCTTGTTTGGCTACAGCTGCCCACTCTTGATGTAAGCTTAACCAAATTGCTGCACTTATTCACTTCCTGCTATGCTTTCTGA

>Glyma19g02871.1   sequence type=predicted peptide   gene model=Glyma19g02871   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFARHGGFKWQRVNKLCNEVREFGADLIEVDELASVYDLIGADLIDDIYQRWFVGLRLLLSPVTSNLLLRTTCCSIGLALPVYSTFKAIENNDPYEQQRCLLYWAAYGSFSAAEMFAEKLFSWIPLYYHMKFAFLVWLQLPTLDVSLTKLLHLFTSCYAF*







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