SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g02825

Feature Type:gene_model
Chromosome:Gm19
Start:2793604
stop:2799642
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g02825
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01150AT Annotation by Michelle Graham. TAIR10: polypyrimidine tract-binding protein 1 | chr3:51732-54344 FORWARD LENGTH=399 SoyBaseE_val: 1.00E-116ISS
GO:0000381GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of alternative mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006417GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translation SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009846GO-bp Annotation by Michelle Graham. GO Biological Process: pollen germination SoyBaseN/AISS
GO:0043484GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of RNA splicing SoyBaseN/AISS
GO:0000932GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG1190 KOG Polypyrimidine tract-binding protein JGI ISS
PTHR11546Panther HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN JGI ISS
PTHR11546:SF16Panther PTB (POLYPYRIMIDINE TRACT-BINDING), RNA BINDING JGI ISS
UniRef100_G7KKW6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polypyrimidine tract-binding protein-like protein n=1 Tax=Medicago truncatula RepID=G7KKW6_MEDTR SoyBaseE_val: 2.00E-118ISS
UniRef100_UPI000233D171UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D171 related cluster n=1 Tax=unknown RepID=UPI000233D171 SoyBaseE_val: 4.00E-173ISS

Expression Patterns of Glyma19g02825
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02825 not represented in the dataset
Glyma19g02825 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02825 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g024300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g02825
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g02825
>Glyma19g02825.1   sequence type=CDS   gene model=Glyma19g02825   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCGGAGGTGGTTCACTTCCGAAACCTTCCAAAACAATGTTCTGAAGAGAAGCTCATAGAGTTGTGTAGCCCCTTCGGCAAAATTGTCAATCTCGTGTTGTGTTGGTCCAATAAAAATCAAAATATAAATGAAGCCATTTCAATGGTTTCACACTATTCATCTTCGGATTTTGCTCAACTTCATGGCAAAACTATTTATGTTCAATATTCTAAGAGACAGGAATTTGTCGTTAACAAATTCACTGAAGGAAATATCTTGATTGTATCCATGGAAGGCATCCAAGCTGGAGATATAAGCATTGATGCCATTCATTTGGTCTTTTCTGCATTTGGCTACGTTCACAAAATTTCTACATTTGAAAAGAGTGCAGGTTTCCAGGAGATTGGTCGGAACTATATATGGTCCCAAATCATTGTTTATATCATTCCTCATAATTGTCTATATTCACTCTTATACTTGCTCCCAAATCATGTTGGTGATTGTAACTTGCGCATTGCATACTCAGTGCATCCAGATCTTAATATCAAGTTTCAGTCTAATCGTAGCAGGGACTACACAAATCCTACTCTTCCGGTTAATCAAGCTTCTATTGTTAGGACATTACAGCCAATACCTCGACCTACTGAAAATCATGTCCTTTGGGCTTCATTTGAAAATATGCAGTATGATGTCACTGTGGATGTTCTTCATGCGGTGAGTTTCTTGCAAAAACTTTCTATATTTGAAAAGAACGGCCAAACTTACGCACTAATTCAGTACCCTGATGTAGCCACAGCAACAACTACCAAAAAAGCTCTTGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCGTCTATCATACTCTCGTCATACTGATATCAATGTAAAGGGTTTCAGCAAGAAAAGTAGATACTATACAAGGCCTAATCACAGTGTGTCTGTAGAACAAGTTCCAGCAATAGCTTTGGAGAATCCCCATGCAACCTCTATGTATGGTAGTAGTAGTGCCCGTGCTTTACAGGATCAAGTACATGCAGGACAAATACCATCATGGAATCCAATCTACAGTTACATGCCTGCACCTGGTACTTTTCCTAATCAAACTTATGTAGTTCCTCCATATCCTGCCTATGCTCTTGGTCAAAGCAATAATATGGTTCATAATGAAAGTTACGTGGAAATCACTCCACCCGGGGTTCCTGCTCCTGGTGTACAACCTTATTATTATGGTTACTAG
Predicted protein sequences of Glyma19g02825
>Glyma19g02825.1   sequence type=predicted peptide   gene model=Glyma19g02825   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSEVVHFRNLPKQCSEEKLIELCSPFGKIVNLVLCWSNKNQNINEAISMVSHYSSSDFAQLHGKTIYVQYSKRQEFVVNKFTEGNILIVSMEGIQAGDISIDAIHLVFSAFGYVHKISTFEKSAGFQEIGRNYIWSQIIVYIIPHNCLYSLLYLLPNHVGDCNLRIAYSVHPDLNIKFQSNRSRDYTNPTLPVNQASIVRTLQPIPRPTENHVLWASFENMQYDVTVDVLHAVSFLQKLSIFEKNGQTYALIQYPDVATATTTKKALEGHCIYDGGYCKLRLSYSRHTDINVKGFSKKSRYYTRPNHSVSVEQVPAIALENPHATSMYGSSSARALQDQVHAGQIPSWNPIYSYMPAPGTFPNQTYVVPPYPAYALGQSNNMVHNESYVEITPPGVPAPGVQPYYYGY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo