SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30280 | AT | Annotation by Michelle Graham. TAIR10: RNA-directed DNA methylation 4 | chr2:12909804-12911860 REVERSE LENGTH=346 | SoyBase | E_val: 2.00E-87 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
| GO:0032502 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF08574 | PFAM | Protein of unknown function (DUF1762) | JGI | ISS | |
| UniRef100_B7F8Y2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J065191E12, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7F8Y2_ORYSJ | SoyBase | E_val: 1.00E-64 | ISS |
| UniRef100_I1N659 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N659_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g02790 not represented in the dataset |
Glyma19g02790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g024000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g02790.1 sequence type=CDS gene model=Glyma19g02790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGAAAGCTCTTCGGCTACGCCTCCACCACCGAAGCCCGTGGTGGTTAGGGTCAAACGCAAGCCCTCGCAATCTCCACTTGATGCTTTCTGGCTCGAAATTAACGAGAGGCCGTTGAAGCGTCCTCTCTTGGATTTTGGAAATTTATCAATCTCCTCCAATTCTGCTCAAAAGGTGGAATTTTATAACAAGAAGGTTTTTGTGCAACATGTGGAGACAATAAGCAGCTCTGAGGTCACCTTTGATATCGTGCAATCCTTTGTGGATCTTGGTTCCAGTGGTGCATCTGATTCCAAGTCAAAAATTAAGGAAAGAAAGAAATTCTTCAACAGGGACAATAAGCAAGATCAGCTATTGTCTAAAGCTAAACAAGAAAAGGAGTCTTTGGCAAAAGATGCTCGCTTTGAACAAATATGGAAAAACAGGAAGGGAAACAAAGGGACAGCACATGATAAAGCATTACAAGAAATGTGCCACTTGTATGACATTGTTCGCATTGACAATGAAGAAAAAAATAAGGAAGTGCAACAGGAAGAAATGTCATTGGAGGATCAACGACTTTTGTCTAGTTACCTCCCTTTACTGAGAGAGTTTATTCCTAATGCGGCTGCAGAGGTTGAAACTGATTTGATTGCTCAGTTGGTTGGTCATTCCAAAGAAGAAAATTATGTGTACGACCTCTACACCGTGAAAGATGAGATGGATATAAACATTGATGATTCTTCGTGTTCATATCCACTAGTTCAAGTTGATGAGGAGGAGGACTATTATGATGGGACACAGCATTCAGATTATGAATCTGATGACTCAAATGCTGAAAACAATCCACTGAATGATTATCCAGATGAGGTTTCTGAAGAGGATGAAGAGGATGAAAATTCTGAGAATGAATCAGAACGTGAGGATGGCAACACGAGCAGTGAATCATCAGATGAGAATATAGAACATGGTTTTTCTGAAGATGATGCTGATCCATTATATGATGAGGATTTTGATGAATATGAAGGTGCTCATAGTGATGATGTTGAGCATATGGATGATGAAAATTGGAGGTGGTCGTACCGATGA
>Glyma19g02790.1 sequence type=predicted peptide gene model=Glyma19g02790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESSSATPPPPKPVVVRVKRKPSQSPLDAFWLEINERPLKRPLLDFGNLSISSNSAQKVEFYNKKVFVQHVETISSSEVTFDIVQSFVDLGSSGASDSKSKIKERKKFFNRDNKQDQLLSKAKQEKESLAKDARFEQIWKNRKGNKGTAHDKALQEMCHLYDIVRIDNEEKNKEVQQEEMSLEDQRLLSSYLPLLREFIPNAAAEVETDLIAQLVGHSKEENYVYDLYTVKDEMDINIDDSSCSYPLVQVDEEEDYYDGTQHSDYESDDSNAENNPLNDYPDEVSEEDEEDENSENESEREDGNTSSESSDENIEHGFSEDDADPLYDEDFDEYEGAHSDDVEHMDDENWRWSYR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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