Glyma19g02790 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g02790

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2728167
stop:	2739693
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30280	AT	Annotation by Michelle Graham. TAIR10: RNA-directed DNA methylation 4 \| chr2:12909804-12911860 REVERSE LENGTH=346	SoyBase	E_val: 2.00E-87	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0032502	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF08574	PFAM	Protein of unknown function (DUF1762)	JGI		ISS
UniRef100_B7F8Y2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J065191E12, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7F8Y2_ORYSJ	SoyBase	E_val: 1.00E-64	ISS
UniRef100_I1N659	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N659_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g02790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g024000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02790

Limit To All Plant Sequences

>Glyma19g02790.1   sequence type=CDS   gene model=Glyma19g02790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAAAGCTCTTCGGCTACGCCTCCACCACCGAAGCCCGTGGTGGTTAGGGTCAAACGCAAGCCCTCGCAATCTCCACTTGATGCTTTCTGGCTCGAAATTAACGAGAGGCCGTTGAAGCGTCCTCTCTTGGATTTTGGAAATTTATCAATCTCCTCCAATTCTGCTCAAAAGGTGGAATTTTATAACAAGAAGGTTTTTGTGCAACATGTGGAGACAATAAGCAGCTCTGAGGTCACCTTTGATATCGTGCAATCCTTTGTGGATCTTGGTTCCAGTGGTGCATCTGATTCCAAGTCAAAAATTAAGGAAAGAAAGAAATTCTTCAACAGGGACAATAAGCAAGATCAGCTATTGTCTAAAGCTAAACAAGAAAAGGAGTCTTTGGCAAAAGATGCTCGCTTTGAACAAATATGGAAAAACAGGAAGGGAAACAAAGGGACAGCACATGATAAAGCATTACAAGAAATGTGCCACTTGTATGACATTGTTCGCATTGACAATGAAGAAAAAAATAAGGAAGTGCAACAGGAAGAAATGTCATTGGAGGATCAACGACTTTTGTCTAGTTACCTCCCTTTACTGAGAGAGTTTATTCCTAATGCGGCTGCAGAGGTTGAAACTGATTTGATTGCTCAGTTGGTTGGTCATTCCAAAGAAGAAAATTATGTGTACGACCTCTACACCGTGAAAGATGAGATGGATATAAACATTGATGATTCTTCGTGTTCATATCCACTAGTTCAAGTTGATGAGGAGGAGGACTATTATGATGGGACACAGCATTCAGATTATGAATCTGATGACTCAAATGCTGAAAACAATCCACTGAATGATTATCCAGATGAGGTTTCTGAAGAGGATGAAGAGGATGAAAATTCTGAGAATGAATCAGAACGTGAGGATGGCAACACGAGCAGTGAATCATCAGATGAGAATATAGAACATGGTTTTTCTGAAGATGATGCTGATCCATTATATGATGAGGATTTTGATGAATATGAAGGTGCTCATAGTGATGATGTTGAGCATATGGATGATGAAAATTGGAGGTGGTCGTACCGATGA

Predicted protein sequences of Glyma19g02790

Limit To All Plant Sequences

>Glyma19g02790.1   sequence type=predicted peptide   gene model=Glyma19g02790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESSSATPPPPKPVVVRVKRKPSQSPLDAFWLEINERPLKRPLLDFGNLSISSNSAQKVEFYNKKVFVQHVETISSSEVTFDIVQSFVDLGSSGASDSKSKIKERKKFFNRDNKQDQLLSKAKQEKESLAKDARFEQIWKNRKGNKGTAHDKALQEMCHLYDIVRIDNEEKNKEVQQEEMSLEDQRLLSSYLPLLREFIPNAAAEVETDLIAQLVGHSKEENYVYDLYTVKDEMDINIDDSSCSYPLVQVDEEEDYYDGTQHSDYESDDSNAENNPLNDYPDEVSEEDEEDENSENESEREDGNTSSESSDENIEHGFSEDDADPLYDEDFDEYEGAHSDDVEHMDDENWRWSYR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain