Glyma19g02730 - SoyBase

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Report for Sequence Feature Glyma19g02730

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2672549
stop:	2677567
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15080	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:4886414-4888555 FORWARD LENGTH=493	SoyBase	E_val: 5.00E-157	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF661	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9S2B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase APK1B, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9S2B9_RICCO	SoyBase	E_val: 7.00E-160	ISS
UniRef100_UPI000233DED8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DED8 related cluster n=1 Tax=unknown RepID=UPI000233DED8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g02730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g023500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02730

Limit To All Plant Sequences

>Glyma19g02730.2   sequence type=CDS   gene model=Glyma19g02730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCACAAGTGGTGCTGGTAATAGGATTGGTTATAGGAGTGCAAGAAGATTCAAGGGGGAGAGAAATAAAGATGTCACCTACGAAGAAGGCTCAAATTTTTTGAAGAAATTGAAGATTTTCCTAGGCTGCATGTTTTTTAGTTCAAAACAGGAAGACTCGAGGAGTGACAAGAGCAGACAGGGAAGAAATGTTACAAATGATTTGGTTAGACACCAACCAGTTACCCAAAGATCCTTATCCACCAAAAGGTCAAAAAGATCCTCAGCCACCAACTTAAGCCAGGAAATAATCCAAGCTTCTTCCCTTCGAAGATTCACCTTTAATGATCTTAAGTTGGCAACAAGAAATTTTGAGTCTAAGAATCTTCTTGGTGAGGGGGGTTTTGGAACTGTGTTGAAAGGTTGGGTCAATGAGCATGAGAACTTTGCAGCACGACCTGGAACAGGGACTCCAGTTGCAGTGAAGACTCTCAACCCAAATGGATTTCAAGGTCATAAAGAATGGCTTGCTGAAATTAATTATCTTAGTGAGCTCCATCATCCAAATCTGGTTAGATTGGTTGGCTATTGCATCGAAGATGCTAAAAGGTTACTAGTATATGAGTATATGTCTCAAGGAAGCTTAGACAACCATTTGTTCAAGACGGCAACTAAGCACCTTACATGGCCTATCAGAATGAAAATTGCAATTGGTGCTGCTAATGCCCTTGCATTTTTGCATGAGGAAGCTTCAAGGCCAGTAATATTCCGAGATTTCAAGACATCTAATGTCCTATTGGATGAGGACTACAATGCAAAACTTTCTGACTTTGGGCTTGCCCAAGATGCTCCAGTGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTGATGACGGGACACCTTACTTCCAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTACTTGAAATGCTGACAGGAAGAAGAGCCGTGGATCAAAGAGTTCCTAGGAAGGAGCAAAACTTGGTGGAATGGTTGCGTCCTCGTCTTAGGGAGAAAGATAATTTTCACTATCTAATGGATCCAAGACTTGGAGGTCAATACCCAATGAAAAGTGCTCGTAGGGCATTGTGGTTGGCCACTCACTGTATTCGTCATAACCCTAAATCAAGACCCCTTATGAGTGAAGTGGTTCGTGAGTTGAAATCTTTGCCTCTTTTTCGTGATGATGATGACATG

Predicted protein sequences of Glyma19g02730

Limit To All Plant Sequences

>Glyma19g02730.2   sequence type=predicted peptide   gene model=Glyma19g02730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METTSGAGNRIGYRSARRFKGERNKDVTYEEGSNFLKKLKIFLGCMFFSSKQEDSRSDKSRQGRNVTNDLVRHQPVTQRSLSTKRSKRSSATNLSQEIIQASSLRRFTFNDLKLATRNFESKNLLGEGGFGTVLKGWVNEHENFAARPGTGTPVAVKTLNPNGFQGHKEWLAEINYLSELHHPNLVRLVGYCIEDAKRLLVYEYMSQGSLDNHLFKTATKHLTWPIRMKIAIGAANALAFLHEEASRPVIFRDFKTSNVLLDEDYNAKLSDFGLAQDAPVGDKTHVSTEVMGTQGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDQRVPRKEQNLVEWLRPRLREKDNFHYLMDPRLGGQYPMKSARRALWLATHCIRHNPKSRPLMSEVVRELKSLPLFRDDDDM

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