Glyma19g02725 - SoyBase

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Report for Sequence Feature Glyma19g02725

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2655327
stop:	2657481
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02725

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39680	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:15884236-15886368 REVERSE LENGTH=710	SoyBase	E_val: 2.00E-73	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7L209	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7L209_MEDTR	SoyBase	E_val: 3.00E-102	ISS
UniRef100_I1LWL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWL1_SOYBN	SoyBase	E_val: 1.00E-142	ISS

Expression Patterns of Glyma19g02725

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02725 not represented in the dataset	Glyma19g02725 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g02725

Paralog	Evidence	Comments
Glyma13g05500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g02725 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g023400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02725

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02725

Limit To All Plant Sequences

>Glyma19g02725.1   sequence type=CDS   gene model=Glyma19g02725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGTTCAGAAACTGCCACTTGCCACCCCTGCATTTCCTGTGTATCTGCCACATTTTTGTTCCCTCAAAGAACTTGCTAACCTCTTGAAACTCTCCGCCACTGCAAAGAGCTTGAGATTTGGCAAAACCATCCATGCCCAGTTGGTTGTTCGCAACCAAACTTCAAAGGACAGTGACATCACTCAAATGAATTCACTGATCAATCTATATTCCGAATGTGGTCAATTGAAATGTGCCAGAAAACTGTTGACCCAGAGAAAAGTGGTTTCTTGGAGTGTCTTGATGGTGGGGTATTTACACAAGGGTGAGGTGTTGGAAGCACTTGGGCTATTCAGGAACCTGGTTTCATTGGACAGTGCATGCCACAATGAGTATATATTTACAATTGCTCTTTCTTCTTGTGCAGACAGTGGAAGAGTCCAAGAGGGGAAGCAGTGTCATGGGTATTTGTTGAAGTCCGGGTTGTTGTTGCATCAATATGCGAAGAATGCACTCATTCACATGTACTCAAGGTGCTTTCATGTTGATTCAGCCATGCAGATTTTGGATACTGTTCCTGGGGATGATGTATTTTATTATAATTGCATCTTGAGTGCACTTGTAGAATCAGGATGTCAAGGAGAAGCTGCACAAGTTTTGAAGAGGATGGTGGATGAATGTGTAGTCTGGGATAGTGTTACATATATTAGAGATTTGCAATTGGGTTTGCAGATCCATGCCCAGTTGTTGAAAACTGGTTTGGTATTTGATGTCTTTGTTGGTAGCACACTGATAGACACCTATGAAGCACGGACACTCCAGTCCCTTATTGTGTTTGGTGTTCGACACTCATCCGTGTCAGTGTTCGACACCAACACGACACCCACATTACAAGTGTTCACGTGTCCGTGTCCGTGTCGATGTCGGTGTTTCATAGATAGACACACTGCCATCATGACTGCTTATTTGCAAAATGGACATTTTGAGGAAACTTTGAATCTATTTACAAAGATGGAGCTTGAGGATACGCATCCAAATGAGATCACTTTTGCAGTTCTGCTAAACACTTGTGCGAGTATGGTGGCACTAGCATATGGTGATTTATTACATGGTCGTATAGTGAAGTCGGGATTTAAGATTCATCTCATTGATGATGGGGAAACTGAAGGGGATGTGAATCATCGCATTCAAGCAGGATGGATGAAATGGAGAAAAGCATCGGGGGTGTTATGTGATGCAAAGGTACTGATCAAGCTAAAGGGAAAGTTTTATCGGACTGCGATAAGACCGGCGATTTTGTACGGAACAGAATGTTGGGCGGTCAAGAGCCAACATGAGAATAAAGTAGGTGTAGCGGAGATGAGGATGTTGCGGTGGATGTGTGGTAAGACTCGACAGGATAAAATTAGAAACGAAGCTATTAGAGAGAAG

Predicted protein sequences of Glyma19g02725

Limit To All Plant Sequences

>Glyma19g02725.1   sequence type=predicted peptide   gene model=Glyma19g02725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVQKLPLATPAFPVYLPHFCSLKELANLLKLSATAKSLRFGKTIHAQLVVRNQTSKDSDITQMNSLINLYSECGQLKCARKLLTQRKVVSWSVLMVGYLHKGEVLEALGLFRNLVSLDSACHNEYIFTIALSSCADSGRVQEGKQCHGYLLKSGLLLHQYAKNALIHMYSRCFHVDSAMQILDTVPGDDVFYYNCILSALVESGCQGEAAQVLKRMVDECVVWDSVTYIRDLQLGLQIHAQLLKTGLVFDVFVGSTLIDTYEARTLQSLIVFGVRHSSVSVFDTNTTPTLQVFTCPCPCRCRCFIDRHTAIMTAYLQNGHFEETLNLFTKMELEDTHPNEITFAVLLNTCASMVALAYGDLLHGRIVKSGFKIHLIDDGETEGDVNHRIQAGWMKWRKASGVLCDAKVLIKLKGKFYRTAIRPAILYGTECWAVKSQHENKVGVAEMRMLRWMCGKTRQDKIRNEAIREK

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