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Report for Sequence Feature Glyma19g02690

Feature Type:gene_model
Chromosome:Gm19
Start:2570331
stop:2578494
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01180AT Annotation by Michelle Graham. TAIR10: starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792 SoyBaseE_val: 0ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0010021GO-bp Annotation by Michelle Graham. GO Biological Process: amylopectin biosynthetic process SoyBaseN/AISS
GO:0010264GO-bp Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process SoyBaseN/AISS
GO:0019375GO-bp Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009011GO-mf Annotation by Michelle Graham. GO Molecular Function: starch synthase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PTHR12526Panther GLYCOSYLTRANSFERASE JGI ISS
PTHR12526:SF17Panther STARCH SYNTHASE JGI ISS
PF00534PFAM Glycosyl transferases group 1 JGI ISS
PF08323PFAM Starch synthase catalytic domain JGI ISS
UniRef100_B9VJS7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Starch synthase IIa-2 n=1 Tax=Glycine max RepID=B9VJS7_SOYBN SoyBaseE_val: 0ISS
UniRef100_B9VJS7UniRef Annotation by Michelle Graham. Best UniRef hit: Starch synthase IIa-2 n=1 Tax=Glycine max RepID=B9VJS7_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02690 not represented in the dataset

Glyma19g02690 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g05441 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g022900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02690.1   sequence type=CDS   gene model=Glyma19g02690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGATGGGTTCTTTACCGTTTCTCGTGGAAGCCAATGCTGACTCCACTGTGATGATGATGATGCTTCACAATAGGAATCACAAGTTTTCTTCATCAAAGTTTAGCACTCTGAATGCTTCATCGTTAGTAAGAGGGTGGGGGCGTGGAAGAGTGAAACATAGGTGTAGTAGAGGTTTGTTGTGTTTGGTGGAGAAGAATAAGCACATAAGTGCTTTAGGGAAGAGTTCTGGGACAAGTGAGGATAAGGATGATTCAGATGAAGTGCTTCAAGCCACAATTGAGAAGAGTAAGAAGGTTCTTGCTTTGCAAAGGGAATTGCTTCAACAGATTTCTGAAAGAAAGAAACTGGTTTCTTCAATAAATAGTGAAACCACCCCTGAAATAGGAGACAGTATTTCTTATGAGCACAGTGACAAATCCCTGTCAAGTGACTCAAATCCACAGAAAGGTTCTGCCAGAAGAGGCAGTGCTTTTGAGAACGAAAATGGTGGTGTTGTTTCAAGCAATTATGTCGAATCTATTGAGAAGGAAATACCAGATGTCTCATTTGTAGGCATTGATCTCGGTTTGGACAAAAGTGAAGAGGAAGATGATAATTTGTCTCCTGTTGAAAAGGCTTCACCTAGGCTATATGTTGATGAACAGTTGAATAGCAAGAGATATGAGATAATAAAACCTGATACCCTGCCAAGTGATATCCCATGTAGCACTGAAACTTTCAGTCGAAAGATTGAAATACTTGAAGCTTTGAGTGAATCAAGTACAAAGGAGGTTGCTAATGAAGCTGACAATGTGGAGGGTGAAGGTGAAAAGCCCCCACCTTTGGCTGGGGCCAATGTCATGAATGTTATATTGGTTGCAGCAGAATGTGCTCCCTTTGTCAAAACAGGTGGTCTTGGAGATGTTGTTGGATCATTACCTAAGGCTTTGGCTAGGCGTGGACACAGAGTTATGGTTGTAGTACCTCGGTATAGTCATTATGCTGAAGCACAAGATTTAGGAGTACGGAAACGATACAAAGTAGATGGTCAGGACATGGAAGTAACATATTTCCACTCTTATATCGATGGTGTTGACTTCGTTTTTATTGACAGTCCAAACTTCCGCCATTTACAGGATAACATATACAGGGGAAGCCGAGAGGATATTCTAAAACGCATGGTGTTGTTTTGCAAGGCAGCTGCTGAGGTTCCTTGGCATGTTCCATGTGGTGGTGTTTGCTATGGAGATGGAAATTTGGCCTTCATCGCAAATGATTGGCATACTGCTTTGCTGCCAGTGTATCTGAAAGCCTATTATCGTGACCATGGTATAATGAAGTACACAAGATCTGTTCTTGTGATTCATAACATAGCACACCAGGGTCGGGGCCCCGTTGATGATTTTCGCTACACGGACTTACCTGAACACTACATAGACCTTTTCAAATTATATGACCCAGTTGGAGGTGAGCACTTCAATATCTTTGCAGCCGGTTTAAAGGCAGCTGACCGGATTGTCACTGTGAGTCATGGATATGCATGGGAGATTAAAACTTCCGAAGGTGGTTGGGGTTTGCATGGGATCATATATGAGAATGACTGGAAATTGAGAGGAATTGTGAATGGAATTGACACGAAAGATTGGAACCCCAAGTTTGATGTCCACTTGAAATCAGATGGATACACTAACTACACCCTTGAGACCCTGCAAAGTGGCAAGCGTCGGTGCAAAGCCGCCTTGCAAAAGGAGCTCGGTTTTCCTGTCCGTGAGGACGTTCCGTTACTCGGATTCATTGGGAGGCTGGATCAACAGAAAGGCATTGATCTCATAGCCGAATCAATTCCTTGGATAGTGAGCCAGGATGTGCAGCTAGTCATGTTGGGAACTGGAAGGCCGGACTTAGAAGACATGCTTAGGCAGTTTGAGTCCCAACACCGTGACAAAGTCAGAGGATGGGTTGGCTTTTCTGTCAAGATGGCGCACCGGATAACAGCAGGTGCAGATATACTGCTCATGCCATCAAGATTTGAGCCGTGTGGATTGAATCAACTCTATGCGATGAATTATGGAACAATTCCAGTTGTACATGCTGTCGGTGGACTGAGGGACACTGTGAAGCCTTTTAATCCGTTTGAAGAGTCAGGCCTTGGATGGACATTTGACAGTGCAGAAACTAACAAGTTAATAAACGCGATAGGGAACTGCTTGTTGACCTTCAGGCAGTATAAGCAGAGCTGGGAAGGGCTTCAACGGCGAGGGATGACGCAGGATCTTAGTTGGGACAATGCTGCTCAGCAGTATGAGGAGGTTCTTGTTGCTGCTAAGTACCAATGGTAA

>Glyma19g02690.1   sequence type=predicted peptide   gene model=Glyma19g02690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASMGSLPFLVEANADSTVMMMMLHNRNHKFSSSKFSTLNASSLVRGWGRGRVKHRCSRGLLCLVEKNKHISALGKSSGTSEDKDDSDEVLQATIEKSKKVLALQRELLQQISERKKLVSSINSETTPEIGDSISYEHSDKSLSSDSNPQKGSARRGSAFENENGGVVSSNYVESIEKEIPDVSFVGIDLGLDKSEEEDDNLSPVEKASPRLYVDEQLNSKRYEIIKPDTLPSDIPCSTETFSRKIEILEALSESSTKEVANEADNVEGEGEKPPPLAGANVMNVILVAAECAPFVKTGGLGDVVGSLPKALARRGHRVMVVVPRYSHYAEAQDLGVRKRYKVDGQDMEVTYFHSYIDGVDFVFIDSPNFRHLQDNIYRGSREDILKRMVLFCKAAAEVPWHVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFRYTDLPEHYIDLFKLYDPVGGEHFNIFAAGLKAADRIVTVSHGYAWEIKTSEGGWGLHGIIYENDWKLRGIVNGIDTKDWNPKFDVHLKSDGYTNYTLETLQSGKRRCKAALQKELGFPVREDVPLLGFIGRLDQQKGIDLIAESIPWIVSQDVQLVMLGTGRPDLEDMLRQFESQHRDKVRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVKPFNPFEESGLGWTFDSAETNKLINAIGNCLLTFRQYKQSWEGLQRRGMTQDLSWDNAAQQYEEVLVAAKYQW*







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