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Report for Sequence Feature Glyma19g02680

Feature Type:gene_model
Chromosome:Gm19
Start:2545470
stop:2557462
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g02680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48600AT Annotation by Michelle Graham. TAIR10: structural maintenance of chromosome 3 | chr5:19701908-19709091 FORWARD LENGTH=1244 SoyBaseE_val: 0ISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007059GO-bp Annotation by Michelle Graham. GO Biological Process: chromosome segregation SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0051276GO-bp Annotation by Michelle Graham. GO Biological Process: chromosome organization SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005694GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromosome SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0996 KOG Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) JGI ISS
PTHR18937Panther STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER JGI ISS
PTHR18937:SF13Panther DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE JGI ISS
PF02463PFAM RecF/RecN/SMC N terminal domain JGI ISS
PF06470PFAM SMC proteins Flexible Hinge Domain JGI ISS
UniRef100_I1N651UniRef Annotation by Michelle Graham. Most informative UniRef hit: Structural maintenance of chromosomes protein n=1 Tax=Glycine max RepID=I1N651_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233DED7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DED7 related cluster n=1 Tax=unknown RepID=UPI000233DED7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g02680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g02680
ParalogEvidenceComments
Glyma13g05430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g02680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g022800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g02680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g02680
>Glyma19g02680.1   sequence type=CDS   gene model=Glyma19g02680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCGCACGCCGAGTCCGCACCCGACTCAGCCACTCGCCACCGCTCCTCCGCGCGCCCCAGGCTCTTCATAAAGGAGATGGTCATGCGCAACTTCAAATCCTACGCCGGCGAACAGCGCGTCGGTCCCTTCCACAAGAGTTTCTCCGCCGTGGTGGGACCTAACGGGAGCGGGAAGAGCAACGTCATCGACGCGATGCTGTTTGTGTTTGGGAAGAGAGCAAAGCAGATGCGGCTGAACAAAGTTTCGGAGCTAATACACAATTCCACCAATCACCAGAATTTGGATAGTGCGGGGGTTTCAGTTCATTTTCAAGAGATTGTGGATTCGGATGATGGAACATATGAGGCTGTTCCAGGAAGTGATTTTGTGATTACCAGGGTGGCTTTCCGGGATAACTCCTCTAAGTATTACATTAATAACCACACGAGTAACTTTACAGAAGTTACGAAGAAATTGAAAGGGAAAGGTGTTGACCTTGACAATAACAGGTTTCTTATTCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAACCAAAAGCTCAAGGGCCTCATGATGAAGGTTTTCTAGAATATCTGGAGGATATCATTGGAACCAACAAATATGTGGAAAAGATTGATGAATCACACAAACTGTTAGAATCCCTGAATGAGAAAAGATCTGGGGTGGTACAAATGGTTAAGCTATCTGAGAAAGAAAGAGACAGCTTGGAGGATGTGAAAAATGAAGCAGAAGCATACATGCTGAAGGAGTTGTCTCTGTTGAAATGGCAAGAGAAAGCTACAAAGTTTGCCCTTGATGATACAGGTGGAAAAATGGATGAGTTACAAGGGAATGTTGTTACTCTAGAAGAAAATCTCAAGGCAGAGAGGGATAAAATCCAAGATAGTAAACAAACTCTCAAAGAGCTTGAAACTACGCACAACAACTATATGAAAAGACAAGAGGAGTTAGATAATGATATGAGGAAGTGCAAGGAAGAGTTCAAAGAGTTTGAGAGGCAGGATGTTAAGTATCGGGAGGATTTTAAGCATGTGAATCAGAAGATAAAAAAGCTAGAGGATAAAGTAGAAAAGGATTCATCAAAAATTGAAGCCTTTATAAAAGAGGGTGAGGAATCAACTGATCTGATACCAAAACTTGAGGACAATATACCAAAATTGCAAAAGTTGTTGCTTGATGAGGAGAAGGCCTTAGAAGAAATCACAGAGAGTTCCAAAGTTGAAACTGAGAAATACCGCTCTGAGCTTTCTAAAGTTCGTACTGAGCTTGAACCTTGGGAAAAGGATTTGATTGAGCACAATGGAAAACTTGAAGTTGCATGTACAGAGGCTAAGCTTCTAAATGAAAAGCATGAAGGTGCTTCTCAAGCCTTTAAAGATGCTCAAAAGAAGATGAAAAGCATATCAGAAACAATTAAATCGAAAACTGCCAGCATTTCTCAAATCAAGAGTAATATAGAAAAGTGCAAGCATGAAGCTTCAGAAGCTCACCAAATTGAAGAAGAATGTATCAAAGAACAAGATGAATTGATTCCTCTTGAACAAAGTGCTAGACAGAAAGTTGCAGAACTGAAGTCTGTTCTAGATTCTGAGAAGAGTCAGGGATCAGTTCTAAAAGCAATCCTGAAAGCTAAGGAAACAAAACAAATAGAAGGAATATATGGTCGCATGGGTGATTTAGGTGCTATTGATGCAAAATATGATGTTGCAATATCAACAGCATGCCATGGACTGGATTATATTGTGGTGGAAACAACAAATGCAGCTCAAGCATGTGTTGAGTTACTTCGTAGAGAGAATCTTGGTGTTGCTACTTTCATGATATTGGAGAAGCAAGTTGATCTTCTTCCAAAGTTGAAAAAGAATGTAAACACTCCAGAGGGGGTTCCACGTCTTTTTGATTTAGTGAAAGTTCAAGATGAAAGAATGAAGCTTGCTTTCTTTGCGGCACTTAGAAACACTGTGGTTGCTAAAGATCTTGACCAGGCAACACGTATAGCATATGGTGGAAACACTGAGTTTCGTCGAGTTGTTACCCTTGATGGTGCACTCTTTGAAAATTCTGGAACAATGAGTGGTGGGGGTAGTAAGCCCCGTGGTGGGAAGATGGGGACATCTATTCGAGCTACAAGCATGTCTGCAGAAAGTGTTGCAAATGCTGAGAAAGAGTTGTCTAGGTTGACCAATAAACTGAATGACTTCCGCCAAAGAATTATGGCTGCTGTGCAGCATTATCAGGCCTCAGAAAAAGCTGTTGCTGCTTTAGAAATGGAGTTAGCTAAAAGTCAGAAGGAGGTTGACAGTTTAAAATCACAATATAATTATATTGAGAAACAACTTGATTCCCTTGAGGCAGCATCAATGCCACAGGAGGATGAGCTTGACAGAATGAAAGAGCTGAAGAAGATTGTTTCTGCAGAAGAAAGGGAGATTAATAGACTTACTAATGGATCAAAACAACTGAAGGAAAAGGCTTTGGAGCTCCAGAGAAATTTAGAAAATGTTGGGGGTGAAAAATTAAAATCTCAGAAGTCAAAGGTCCAGAAAATTCAATCTGACATTGATAAGCATAGTTCAGGAATAAACCGTTGTAAGGTCCAAATAGAGACAGGACAAAAAATGGTGAAAAAACTGACTAAAGGAATTGAGGATTCAAAGAAGGAGAAAGACCGGCTTACAGAGCAAAAGGAGAAGCTAACACAAGCCTTCAAAGAAATTGAGCAGAAAGCATTTGTAGTTCAAGAGAACTATAAAAAAACCCAAGAGTTGATTGACAAACATACGATTGTCTTGGAGAAAGCAAAATCAGATTACAACAAGATGAAAAAAGTGATGGATGAATTGCGTGCATCTGAGGTTGATGTTGACTTTAAATTAAAGGACATGAAGAAAGCTTACAAAGAATTGGAAATGAAGAGGAAAGGTTACAAGAAAAGACTAGATGATTTGCAAACTGCCCTTCGCAAGCATCTCGAACAAATTCAGGCAGATTTAGTGGATCAAGAAAAGCTACAGGCTACGTTGGATGATGAACATCTTAATGCTGCTTGTGACCTGAAAAAAGCCTGTGAAATGGTTGCTCTGCTTGAAGCACAACTAAAGGAGATGAATCCAAATCTTGATTCAATTTCAGAATATCGAAAGAAGGTATCTTCATACAATGAGCGAGTTGAAGAACTTAATGCAGTCACACAGGAGCGGGATGACATAAAGAAGCAGTATGATGAATGGAGAAAGAAGAGATTGGACGAGTTTATGGAAGGATTTAATGCCATATCTTTAAAGTTAAAAGAAATGTATCAGATGATCACTCTTGGAGGTGATGCAGAACTTGAGCTTGTGGATTCTTTGGATCCTTTCTCTGAAGGTGTTGTGTTCAGTGTCAGACCACCAAAGAAAAGCTGGAAAAATATTGCAAATTTATCGGGTGGTGAAAAGACTCTTAGCTCGCTGGCTCTTGTATTTGCTCTTCATCATTACAAACCTACCCCACTCTATGTAATGGATGAAATTGATGCTGCCCTGGACTTCAAGAATGTATCTATCGTCGGGCATTATGTGAAAGACAGGACCAAGGATGCTCAATTCATAATCATTAGTCTTAGGAACAATATGTTTGAATTGGCTGATCGACTTGTTGGGATATATAAAACGGATAATTGCACAAAGAGCATTACTATCAATCCGGGGAGTTTCGTGATATGCGAAAAGGCTGCTTGA
Predicted protein sequences of Glyma19g02680
>Glyma19g02680.1   sequence type=predicted peptide   gene model=Glyma19g02680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSHAESAPDSATRHRSSARPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIVDSDDGTYEAVPGSDFVITRVAFRDNSSKYYINNHTSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKYVEKIDESHKLLESLNEKRSGVVQMVKLSEKERDSLEDVKNEAEAYMLKELSLLKWQEKATKFALDDTGGKMDELQGNVVTLEENLKAERDKIQDSKQTLKELETTHNNYMKRQEELDNDMRKCKEEFKEFERQDVKYREDFKHVNQKIKKLEDKVEKDSSKIEAFIKEGEESTDLIPKLEDNIPKLQKLLLDEEKALEEITESSKVETEKYRSELSKVRTELEPWEKDLIEHNGKLEVACTEAKLLNEKHEGASQAFKDAQKKMKSISETIKSKTASISQIKSNIEKCKHEASEAHQIEEECIKEQDELIPLEQSARQKVAELKSVLDSEKSQGSVLKAILKAKETKQIEGIYGRMGDLGAIDAKYDVAISTACHGLDYIVVETTNAAQACVELLRRENLGVATFMILEKQVDLLPKLKKNVNTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRIAYGGNTEFRRVVTLDGALFENSGTMSGGGSKPRGGKMGTSIRATSMSAESVANAEKELSRLTNKLNDFRQRIMAAVQHYQASEKAVAALEMELAKSQKEVDSLKSQYNYIEKQLDSLEAASMPQEDELDRMKELKKIVSAEEREINRLTNGSKQLKEKALELQRNLENVGGEKLKSQKSKVQKIQSDIDKHSSGINRCKVQIETGQKMVKKLTKGIEDSKKEKDRLTEQKEKLTQAFKEIEQKAFVVQENYKKTQELIDKHTIVLEKAKSDYNKMKKVMDELRASEVDVDFKLKDMKKAYKELEMKRKGYKKRLDDLQTALRKHLEQIQADLVDQEKLQATLDDEHLNAACDLKKACEMVALLEAQLKEMNPNLDSISEYRKKVSSYNERVEELNAVTQERDDIKKQYDEWRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFVICEKAA*






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