SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G39785 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1666) | chr5:15929257-15932215 FORWARD LENGTH=606 | SoyBase | E_val: 6.00E-113 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| PTHR10759 | Panther | 60S RIBOSOMAL PROTEIN L34 | JGI | ISS | |
| PTHR10759:SF1 | Panther | 60S RIBOSOMAL PROTEIN L34 | JGI | ISS | |
| PF07891 | PFAM | Protein of unknown function (DUF1666) | JGI | ISS | |
| UniRef100_B9T740 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L34, putative n=1 Tax=Ricinus communis RepID=B9T740_RICCO | SoyBase | E_val: 2.00E-142 | ISS |
| UniRef100_UPI000233DED4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DED4 related cluster n=1 Tax=unknown RepID=UPI000233DED4 | SoyBase | E_val: 0 | ISS |
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Glyma19g02591 not represented in the dataset |
Glyma19g02591 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g022000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g02591.1 sequence type=CDS gene model=Glyma19g02591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCTTTTCTCTGGGTATGTTTGGATATTCCTCTCACATCTTGTGGAAACTCTGTTCTGGATTTGCAGCAGAATCTTCATGAGATACACCAGTCATGAAGCTATCAATTCAACTTGTTCTTCAAATCTTTGCCATGAGAACTATCATGATGACTCCAACAATTCCGAGACAAAAATTGAGGCTGAAGAAGATTTTTTTAAATATTCCGAAGATGAAGAGTTGAAAACTGAAGGATTGGAGGAAATTACTAATGCTATTAAATTTAAACAAGAGTGTAGTCATCAAAATGAATCAAATGGTTCTGAACCAGAAGCAAAGTTCAATGAGGATTGTTCTGAAACAGTTACTATTACAAACTGTGCTGGAAATCTTGGCCTTGATGAAGAAGAAGAAAAAGAGAAACTGAGGTTGGTTTTCAAATTCCGGTATCAAACTTGGAAGTGTTGTGAAACTTTTGATTCTGTGAACACTGATAACGTTAAGGCTTCTGAAAGCACCAACAAGCATGAGTTCCTATCAAGTAAGAGTTTCAGCAGCTTCTTGGATGAACCATGCGTTTGTTCAGAATATTTTCCTTTGGAAAATGATTCTGTTGATGAATCAGAGAGAAATTTTGAACCTGAAAGTTGTGAAAGAAGGTGTGTTGATGCAGCAGTGGAGCTCAAGACTGTGCCATCTGTAGAACAAGCTGATGAACATCTAGTGGAGAATCTGAATAACAATGTGTTATTTGAAAAAATTTCAGCTGATAACAATTTCCTTTCTGAAGATGATTTCATTTGTGAAAGCACGGAGTCAAATTCTATGATCAGTTCTATAGGAGATGAATTTTTGTCAGACACAGATTTTGGAACCACTACTAATGTTCACACTTTGGGAAACCATGATGAAGAAAATGCAGTGTTAACAAAAGAAGATTTGAACTTTGAGGGTGAGAAAAGATCAGAGAGTTTTGATGCTGAAGATAGAGATACAACAATGGTTAGGATAAGAAGATTGGAAGAAGAAACTATAATGCAAGATATTGAGAACATAAAGTTGAAAGGGAATTGTTTTCAAGATAGGCATGGCATGAACTTGTTGCATAGTTCAACAGGTTCAGATCTTGAGGATTCGTACCGGTTTGATGCACAATGGGAACATCAAGATTTGATAGAACAGCTCAAGATAGAGCTTAACAAGGTAAGAGATACTGGTCTGCCTACCACCTTTGAGACGCAAAGGATAATAATGGAAGACTTGAAGCCATGGGAAATTGATGAAAAATTCAAGCATGGTAGTGCCATAAATGATCTTACAAAATTCTACAAGAGCTACACAGAAAGAATGAGGAAATTTGATATCTTAAATTACCAAAAGCTGTTTGCCATAGGTGCCCTGAAGACCAAGGACCTTGTGCTATCATTTTCAAGTCGTGAGAACTCTTCCACATTGAAGAAGTTCATGAGGCGTAAAAAATCTGATTCTGACCCATTGAAAAAGTTCGTGAGAGAATTCTACAGTGACTTGGAAATGGCATATGTGGGACAGTTGTGCCTTTCTTGGGATTTCCTTCAGTTGGAGTATGAGAAGGCTTTGCAGTTATGGGAATCTGATCAATGCAGGTTTCAAAGTTACAATGAAGTAGCTGAGGAGTTCCAGCATTTTCAAGTGCTTCTGCTAAGATTTATAGAGAATGAACGTTTCCAAGGTCCACGAGTTGAATACTATGCCAGGAATCGTTGTGCTATGCAAAATTTTCTTCAAGTTCCTGTCATAAGAGAGGACAAAACCAAGGAAGAAGAGAAATTCAAAACAGGAGATGCAGATAAAGATGAAATCACAATTGACATGCTAGTAGAGATTTTAGAAGAATCAATTAAGATAATTTCGCGTTTCATTAGAGCTGATAAAGATGCATCTAGCTTGGCTCATAAAGGTCCTAGAGAAACTCAAGTAAAGCTCCAAGACCCTGCAGATTCAGAATTTCTTAGGGAGATTCAAGCAGAACTTCGAAAGAAGGAAAAGAGACTTAATGAACTTTTGAAGAGAAGTAGCATAATGAAGAAGTTCCAAAAGCATGAGGAAGATGGAAGAGATCATTTGCTTTACTTTTTTCCTCAAGTGGACATGAAACTGGTTTGGAGAGTGTTGAACATGTCAAAAATATCTAGGGATCAACTAGCATGGTGTCATAATAAACTAAGTAACATCAATTTTGTAAACAGAAGTATACATATAGAACCATCTTTCTTGCTTTTTCCTTGTTAA
>Glyma19g02591.1 sequence type=predicted peptide gene model=Glyma19g02591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLFSGYVWIFLSHLVETLFWICSRIFMRYTSHEAINSTCSSNLCHENYHDDSNNSETKIEAEEDFFKYSEDEELKTEGLEEITNAIKFKQECSHQNESNGSEPEAKFNEDCSETVTITNCAGNLGLDEEEEKEKLRLVFKFRYQTWKCCETFDSVNTDNVKASESTNKHEFLSSKSFSSFLDEPCVCSEYFPLENDSVDESERNFEPESCERRCVDAAVELKTVPSVEQADEHLVENLNNNVLFEKISADNNFLSEDDFICESTESNSMISSIGDEFLSDTDFGTTTNVHTLGNHDEENAVLTKEDLNFEGEKRSESFDAEDRDTTMVRIRRLEEETIMQDIENIKLKGNCFQDRHGMNLLHSSTGSDLEDSYRFDAQWEHQDLIEQLKIELNKVRDTGLPTTFETQRIIMEDLKPWEIDEKFKHGSAINDLTKFYKSYTERMRKFDILNYQKLFAIGALKTKDLVLSFSSRENSSTLKKFMRRKKSDSDPLKKFVREFYSDLEMAYVGQLCLSWDFLQLEYEKALQLWESDQCRFQSYNEVAEEFQHFQVLLLRFIENERFQGPRVEYYARNRCAMQNFLQVPVIREDKTKEEEKFKTGDADKDEITIDMLVEILEESIKIISRFIRADKDASSLAHKGPRETQVKLQDPADSEFLREIQAELRKKEKRLNELLKRSSIMKKFQKHEEDGRDHLLYFFPQVDMKLVWRVLNMSKISRDQLAWCHNKLSNINFVNRSIHIEPSFLLFPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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