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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g02591

Feature Type:gene_model
Chromosome:Gm19
Start:2404950
stop:2409330
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39785AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1666) | chr5:15929257-15932215 FORWARD LENGTH=606 SoyBaseE_val: 6.00E-113ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR10759Panther 60S RIBOSOMAL PROTEIN L34 JGI ISS
PTHR10759:SF1Panther 60S RIBOSOMAL PROTEIN L34 JGI ISS
PF07891PFAM Protein of unknown function (DUF1666) JGI ISS
UniRef100_B9T740UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L34, putative n=1 Tax=Ricinus communis RepID=B9T740_RICCO SoyBaseE_val: 2.00E-142ISS
UniRef100_UPI000233DED4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DED4 related cluster n=1 Tax=unknown RepID=UPI000233DED4 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02591 not represented in the dataset

Glyma19g02591 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g022000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02591.1   sequence type=CDS   gene model=Glyma19g02591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTTTCTCTGGGTATGTTTGGATATTCCTCTCACATCTTGTGGAAACTCTGTTCTGGATTTGCAGCAGAATCTTCATGAGATACACCAGTCATGAAGCTATCAATTCAACTTGTTCTTCAAATCTTTGCCATGAGAACTATCATGATGACTCCAACAATTCCGAGACAAAAATTGAGGCTGAAGAAGATTTTTTTAAATATTCCGAAGATGAAGAGTTGAAAACTGAAGGATTGGAGGAAATTACTAATGCTATTAAATTTAAACAAGAGTGTAGTCATCAAAATGAATCAAATGGTTCTGAACCAGAAGCAAAGTTCAATGAGGATTGTTCTGAAACAGTTACTATTACAAACTGTGCTGGAAATCTTGGCCTTGATGAAGAAGAAGAAAAAGAGAAACTGAGGTTGGTTTTCAAATTCCGGTATCAAACTTGGAAGTGTTGTGAAACTTTTGATTCTGTGAACACTGATAACGTTAAGGCTTCTGAAAGCACCAACAAGCATGAGTTCCTATCAAGTAAGAGTTTCAGCAGCTTCTTGGATGAACCATGCGTTTGTTCAGAATATTTTCCTTTGGAAAATGATTCTGTTGATGAATCAGAGAGAAATTTTGAACCTGAAAGTTGTGAAAGAAGGTGTGTTGATGCAGCAGTGGAGCTCAAGACTGTGCCATCTGTAGAACAAGCTGATGAACATCTAGTGGAGAATCTGAATAACAATGTGTTATTTGAAAAAATTTCAGCTGATAACAATTTCCTTTCTGAAGATGATTTCATTTGTGAAAGCACGGAGTCAAATTCTATGATCAGTTCTATAGGAGATGAATTTTTGTCAGACACAGATTTTGGAACCACTACTAATGTTCACACTTTGGGAAACCATGATGAAGAAAATGCAGTGTTAACAAAAGAAGATTTGAACTTTGAGGGTGAGAAAAGATCAGAGAGTTTTGATGCTGAAGATAGAGATACAACAATGGTTAGGATAAGAAGATTGGAAGAAGAAACTATAATGCAAGATATTGAGAACATAAAGTTGAAAGGGAATTGTTTTCAAGATAGGCATGGCATGAACTTGTTGCATAGTTCAACAGGTTCAGATCTTGAGGATTCGTACCGGTTTGATGCACAATGGGAACATCAAGATTTGATAGAACAGCTCAAGATAGAGCTTAACAAGGTAAGAGATACTGGTCTGCCTACCACCTTTGAGACGCAAAGGATAATAATGGAAGACTTGAAGCCATGGGAAATTGATGAAAAATTCAAGCATGGTAGTGCCATAAATGATCTTACAAAATTCTACAAGAGCTACACAGAAAGAATGAGGAAATTTGATATCTTAAATTACCAAAAGCTGTTTGCCATAGGTGCCCTGAAGACCAAGGACCTTGTGCTATCATTTTCAAGTCGTGAGAACTCTTCCACATTGAAGAAGTTCATGAGGCGTAAAAAATCTGATTCTGACCCATTGAAAAAGTTCGTGAGAGAATTCTACAGTGACTTGGAAATGGCATATGTGGGACAGTTGTGCCTTTCTTGGGATTTCCTTCAGTTGGAGTATGAGAAGGCTTTGCAGTTATGGGAATCTGATCAATGCAGGTTTCAAAGTTACAATGAAGTAGCTGAGGAGTTCCAGCATTTTCAAGTGCTTCTGCTAAGATTTATAGAGAATGAACGTTTCCAAGGTCCACGAGTTGAATACTATGCCAGGAATCGTTGTGCTATGCAAAATTTTCTTCAAGTTCCTGTCATAAGAGAGGACAAAACCAAGGAAGAAGAGAAATTCAAAACAGGAGATGCAGATAAAGATGAAATCACAATTGACATGCTAGTAGAGATTTTAGAAGAATCAATTAAGATAATTTCGCGTTTCATTAGAGCTGATAAAGATGCATCTAGCTTGGCTCATAAAGGTCCTAGAGAAACTCAAGTAAAGCTCCAAGACCCTGCAGATTCAGAATTTCTTAGGGAGATTCAAGCAGAACTTCGAAAGAAGGAAAAGAGACTTAATGAACTTTTGAAGAGAAGTAGCATAATGAAGAAGTTCCAAAAGCATGAGGAAGATGGAAGAGATCATTTGCTTTACTTTTTTCCTCAAGTGGACATGAAACTGGTTTGGAGAGTGTTGAACATGTCAAAAATATCTAGGGATCAACTAGCATGGTGTCATAATAAACTAAGTAACATCAATTTTGTAAACAGAAGTATACATATAGAACCATCTTTCTTGCTTTTTCCTTGTTAA

>Glyma19g02591.1   sequence type=predicted peptide   gene model=Glyma19g02591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLFSGYVWIFLSHLVETLFWICSRIFMRYTSHEAINSTCSSNLCHENYHDDSNNSETKIEAEEDFFKYSEDEELKTEGLEEITNAIKFKQECSHQNESNGSEPEAKFNEDCSETVTITNCAGNLGLDEEEEKEKLRLVFKFRYQTWKCCETFDSVNTDNVKASESTNKHEFLSSKSFSSFLDEPCVCSEYFPLENDSVDESERNFEPESCERRCVDAAVELKTVPSVEQADEHLVENLNNNVLFEKISADNNFLSEDDFICESTESNSMISSIGDEFLSDTDFGTTTNVHTLGNHDEENAVLTKEDLNFEGEKRSESFDAEDRDTTMVRIRRLEEETIMQDIENIKLKGNCFQDRHGMNLLHSSTGSDLEDSYRFDAQWEHQDLIEQLKIELNKVRDTGLPTTFETQRIIMEDLKPWEIDEKFKHGSAINDLTKFYKSYTERMRKFDILNYQKLFAIGALKTKDLVLSFSSRENSSTLKKFMRRKKSDSDPLKKFVREFYSDLEMAYVGQLCLSWDFLQLEYEKALQLWESDQCRFQSYNEVAEEFQHFQVLLLRFIENERFQGPRVEYYARNRCAMQNFLQVPVIREDKTKEEEKFKTGDADKDEITIDMLVEILEESIKIISRFIRADKDASSLAHKGPRETQVKLQDPADSEFLREIQAELRKKEKRLNELLKRSSIMKKFQKHEEDGRDHLLYFFPQVDMKLVWRVLNMSKISRDQLAWCHNKLSNINFVNRSIHIEPSFLLFPC*







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