SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55160 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr3:20445629-2045240 | SoyBase | E_val: 0 | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG1810 | KOG | Cell cycle-associated protein | JGI | ISS | |
| PTHR14387 | Panther | THADA/DEATH RECEPTOR INTERACTING PROTEIN | JGI | ISS | |
| PF10350 | PFAM | Putative death-receptor fusion protein (DUF2428) | JGI | ISS | |
| UniRef100_F1NH52 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thyroid adenoma-associated protein homolog n=1 Tax=Gallus gallus RepID=F1NH52_CHICK | SoyBase | E_val: 1.00E-52 | ISS |
| UniRef100_UPI000233DED0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DED0 related cluster n=1 Tax=unknown RepID=UPI000233DED0 | SoyBase | E_val: 0 | ISS |
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Glyma19g02555 not represented in the dataset |
Glyma19g02555 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g021700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g02555.1 sequence type=CDS gene model=Glyma19g02555 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGGCGAAGTGGCGCGCATTGCAGCACCGCCACCGTTACACCTACACCGCCGTGGTTTTCCCTCCTTCATTCCTCTCCTCCCTCCCCCTCCTCCTCTCCGATGACCCTCTCCTCTCCGCCTTCCACTCCTCACTCCTTCACTTCACCTCCCTCTCCTCCACCCTCTCCCAACTCTCCCAAACCAAACACCTCGCCAACACCTTCCTCCACCTCCTCCAATCCCAACCTAAACCTCCCTCCGAAGCTGAACCTTTTCTCCTCGCTTCCTCACTCTACCTCCACCTTCTCTTCCTCGAAAACTCACACCCCCTCCATAAAACCCTCCTTTCCCCACTCGCCAATACGACGCCGTTCCGCTCCACCCTCGCCGCCTCCTTCGAAACCCTCCTCCACACCAAAACCTTCCCGCGCTTCTCCGTTTCGCGCGCCGCGCTATCTGTCCTCGGCTTGCCCAAGCTCGACTACCTCGCTGCGGTTGTCGAAAATTGCGGCGTCCTCGTCGCCTACGACGCCGTCAATGGCCTTGACGGCGTCATCTCCGAGACCTCCCGGCCTTCACCTGTTGTCATGGAACAGTGCCAGGAGGCGCTGTCGTGTCTGTATTACTTGCTGCAGAAGTTTCCTTCCAAGTTTCGCGAGGGTTGTGAATGTGATGTTATGGAAGGGATTGTGAGTGTTGTGTTGGGTGTTTTGAGCTCAACTGCGTTTTCCAGGGATTGTTTTGTGGCGGCCGGTGTGGCTCTGTGTGCTGCTTTTCAAGTTTGTGTTAGTAAACAAGAGCTTGGTTTGGTTTTGATTCGTGGTGTGTTTAATAGTAACTTGCAGGGTTTAGATTCGGATGGTGGTGGTTGTTGTGATGGGGACATTGGTGAGGTTAGGGATGTGATTGGGAGGATTCCTTGTAAGGGGGATTTGTATTTAGGAATATTTGGTCTTTCTGTGTTGAGTAGGCTTTGTCTTATAAGAGGGATTCTTACCGCAATTTCTAGGGACCTGCTTAATGCTCATTTTAGTGGTGTGAGTGGTGTTAAGACTGTGTTGTATGACGGGGTTTTGCCTGAGCTCTGTAGGCACTGTGAGAATCCTGTTGATAGTCATTTCAATTTTCATGCACTGACGGTGATGCAGATTTGTTTGCAGCAAATTAAGACTTCGTTGTTGTCGAATTTAACTGATTTGTCTGGGGAGTATGAGCCGATTCCGGAGGAAATGGGGATGCGGATACTTAAGATTATTTGGAATAACTTGGAGGATCCTTTGAGTCAAACGGTGAAGCAAGTGCATTTGATATTTGATCTTTTCTTGGACATCCAGTTTTCCCTCTGCGAGGGTGGGGACAGAATAAAGGAGTTTCTAGTGAAGATTGGATCGGATCTTCTTTCGCTGGGGTCGCGGTGTAAGGGGAGGTATGTTCCTTTGGCGTTGCTGACGAAGAGATTGGGAGCGAGGAAGATGTTGGATATGAGCCCGGATTTGCTGTTTGAGACAATGCGGGCATATGTTGACGATGATGTCTGCTGTGCTGCCACATCCTTTCTGAAGTGCTTCCTCGAGTGTTTGCGTGATGAGTTCTGGGAGAGTGATGGCATTGAAGGGGGGTATGTTTTCTATAGGGGGCATTGTCTTCCCCCAGTTCTTTATGGGCTAGCTTCTGAATTCTCTAAACTTCGCACCAATTTAAATACATATGCCCTGCCAGTTTTGCTGGAAGTCGATGTGGATAGTATATTTCCTATGCTTAGTTTCATCTCGGTTGGGCCGAATGGGGATGAGAATGGATTGCAATATCCAGAGCTTGTTTACGTGGACATGGAAGTGAATCTTGAACAGAGAATTGCAATTCTAGTTTCATTGCTCAAGGTATCTCGGTCGCTTGCTTTGGTTGAAGGGGACATTGATTGGGCTGAAAATCCTTTAGCAAACATAAAGGAGCCTGGTCTGGGAACAGACAGCCATGCTATTGTTTGCATAAAGGGAATAAATGTTAAGATCCATGTTCAGTGGCTAGTAAATGCATTGACTCATGTGGATGAGTCACTACGGGTAGATGCTGCTGAGTTGCTTTTCTTAAACCCCAAGACAGCTAGTCTGCCTTCTCATTTAGAGCTCACTCTAATGAAGGAAGCTGTACCTTTGAATATGAGGTGTTGCTTCTCAGCTTTTCAGATGAAGTGGAGCAGCTTGTTTCGTAAGTTTTTCTCTAGGGTTCGAACAGCCCTGGAGAGACAATTCAAGCAAGGAAACTGGAACCCTCTTGAGTGTAATGAAGGTAGTGAAGTTTTTTGTCCTTCAAAAGGGAATAATGATTTGACAATTAAAAGAGCAGATGATCTTTTTCACTTTATGAGGTGGTTGAGTGGATTCTTATTTTTCTCATGCTATCCTTCTGCTCCTTACAAGAGAAAAATAATGGCAATGGATCTCATCTTGATTATGATAAATGTTTGGTCTATCAAGTCATCAAGTAGTTTGGAGTTTAATAGTTCTTTGCCAGGAAGTCATCTCAATCCTTACAGTAAGGGAATGACTTCATCTGATTCAACTCTATTGTTAGTTGGCTCAATTGTTGATAGTTGGGACAGGTTGAGAGAAAACTCATTTCACATATTACTCCATTTTCCGAGCCCACTACCTGGAATTTCTAATGAAGACACGCTGAAGAAGCTAATTGCTTCGTCTATGAAATTAGTTTGCAGTCCACGTGTAAGGGAAAGTGATGCTGGAGCTCTATCTTTACGGCTTATATTTAAGAAGTATGTGTTGGAGCTAGGTTGGTTGATTGAAGATTCATTCAAGGTTGTCCATTTAAGCTCAAAGTCTGAATTGGTAAATGAAGTTAACCAGTTCAATAAATTCAGGAATCCTGTAATACTGTATTTGAAATCAATGATTGATTGGCTGGATGCTGCTGTAAGAGATGGGGAACAAGATCTTTCCAAAGCATGCAAGAACAGCTTTGTCCATGGTGTATTACTTGCTTTACGTTATACTTTTGAGGAATTGGACTGGAATTCTAATGTTATATCAGCCAGCATCTCGGAGCTGAGATATTTGTTGGAAAGACTTCTAGACCTTGTAGTGAGGATAACTTCATTGGCACTATGGGTGGTTTCTTCAGATGCTTGGCATCTCCCTGAAGACATGGATGAGATGCTTGATGAGGATAGTCTTTTGATGGAGATACCAGATCATGAGTGTATGCCTTCATCTGAATATGAGAATAATAATTCAAAGCCTTCCCATGATGGCCGATCATCAGATCAGATAGTCATGGTTGGTTGCTGGCTGGCTATGAAAGAGGTGAGCCTTCTTTTGGGGACTATTATAAGAAAGGTTCCATTGCCAAGTAATGCTTGTTCAGATTTATCTGAGTTAGAGGAGCCTTCTGTTGACACTGCTGGCTTTTCATCTGATTCTGTTCTTGACTTGGAACAACTTAAAACAATAGGGAATCACTTTTTAGAAGTCCTCTTAAAGATGAAGCATAATGGTGCAATTGATAAGACAAGGGCTGGGTTTACAGCTCTTTGCAATCGATTACTTTGCTCAAGTGACTCAAGACTTCATAGATTGACAGAGTCTTGGATGGAACAACTTATGCAAAGAACTGTGGCCAAAGGACAAGTAGTGGATGACTTGCTGAGAAGAAGTGCTGGAATACCTGCTGCATTTATTGCTCTGTTTCTCTCAGAGCCAGAAGGCACCCCAAAGAAGCTCCTGCCACGGGCATTAAGGTGGCTTATAGATGTAGGGAATGGGTCAATGCTGAATCAGACTAAAAGCAATAGCTTGAATGGTGACCCATGCAAGCCAAATGATTCAGCAAATGGAAATAATTATGCACTGTCTGCTGAAAGAAATGTGAGACAGATGTTGTCAAAGATCAGAGATGAAGGTGTCATTCCTACTGTACATGCATTTAATGTTCTGAGAGCTGCATTCAATGACTCTAACTTGGCTACTGATACATCTGGTTTCTCAGCTGAGGCTTTGATTTTGTCTATTCGCTCTTTCTCTTCACCACACTGGGAGATTAGAAACAGTGCTTGTCTGGCTTATACTGCTTTGGTTCGTCGCATGATCGGATTCCTCAATATTCATAAGCGGGAATCAGCACGACGAGCAATAACTGGGCTTGAATTTTTTCATAGGTATCCGGCACTGCATTCATTTCTATTCAATGAACTAGAAGTTGCAACAGAGTTTCTCGGTTGTGCATCTTCAGCAGATTTAGAATCTATCCGTGGAAATAATCTGCATCCAAGCTTGTACCCTATTCTGATTCTTTTATCTAGGCTTAAACCTTCATCAATTGCTGGTGAGACAGGAGATGAGCTAGACCCTTTCCTTTTCATGCCTTGGATTAGAAGGTGCTCAACCCAAAGCAATTTACGTGTTCGTGTTCTTGCATCTAGAGCTCTGACCAGTATAGTATCAAATGAGAAATTGCCATCAGTCCTTTTCAATATTGCATCCGACTTGCCCTGTGTAGATAAACTGGTCAAATCAACTAATTTCCCAATTTCCTTCAACTTCATTCATGGAATTCTCTTGCAATTGAGTGCTTTGCTGGATATAAATTGTAAAGGTCTTGCTGATAACTCAAAGAAAGATCATATCATTGGTGAGTTGATCCAAATTCTTGTACTTCGGTCATGGATTGCAAGGCCTACTCATTGTCAGTGCCCTATCCTCAATGAAACATTCTTAAGAGTTCTGGATCAAATGCTCAATATAGCAAGAACATGCCAAATCACTAAACATTTCTATTCCATTTCAAAGCTACTTTTGGAGTTGTCAACAGAATGCTTAGATGTAGAATCATATGGGTCATCATATTATGATCCAACCATCGCTGAACTTCGTGAGCAAGCAGCCATTTTCTATTTTGGATGTTTTTTTCAAGCATCTATAGATGAGGAAGAGATAATCCATTTACCAGTGAGACATTCTCTTCCTACTTCAGAATCATTGCCTGAACATGAAATAGAGAACACATCTCTTAGTCTTTTGGATAGGTTGATTTGCTGCTTGTCAGATTCATTATATGAAGTTAGACTTGCAACATTGAAGTGGTTGCTGAAGTTACTGAAAGCATCTGAACCCTGTGGTAAGGTCTATGATCTTTTCCATAATGACATCAGGGCTGTTGAACTCTGGGCAAAAACTAACCTTAACGGAACCTTAGTGAAGATTTTGGCATCAGAGAAGAACCACAAATGTAAATATAACATTCTGAGGATCCTTGTAGCTTGGAATTTGCTGCAGTTTGAAAAGGCTAGCCATGACAAGTGCTCCGGTACAAATTATGTTGGTGAAATGGACTTTGACTCTGTGTTCCAATTTTGGAATGAAATAGTTTCCTTGTACAAGCAAACAAGACATGCAAAGACCCAAGAGACCCTTGTTCGCTGTCTGGGAGTATGCACCAAGAGAATAACAATGTTGTTTGCAAGTTCTATTCTGTCAAATGAAAGAATAGAGTTTTTAGTATGTGGTGAAATTAATCAGGAGGAAATGTTAAGTTGGTTGTTTGACTGCATTGTTTTTTTCTGTAACATGATTAAACAACGTAGTTCATCATCTGAACCAGCAAGTATGCGCCAAGCAGCAGCTGAATCTCTGATAGCATCTGGTTTGCTTGAGCAGGCTGGGCTCCTTGGCTCCTTCGTTTTGAATAACCAGATTCCCTTGGGCACTTCATCTTCTTGTTTTGTGAAAAATGAAGCTGTGAATTTGTATGCTCATCAGGTACTAGATGCATGGTTCTCATGCATGAAGCTTTTGGAAGACGAAGATGACTCAGTTAGATTGAGGCTTTCCTCTGATGTTCAGAAGTGTTTTACAACAGAGAAAACTAGAAGCAATCTTACTACTGGGTCGGTTCCAATCCAAGTAGATAGAGTGATAAGATTCTGTTTTGATCATCTCTCTTCCATTTTTGGTCACTGGATTGATTACTTTGATTACCTTTGTCAGTGGGTATTACGGGCTGAAAGCTGTGTAGCACCCCAAGGAGATCTTGTGAGACGGGTTTTTGACAAGGAGATTGACAATCATTATGAAGAGAAGCTGTTGATCAGCCAAATTTGTTGCTCCAACATGGAAAAGTTACCTATTTTGAAGTCCTGGGCGGACAAAGATGAATTCAGAAGCTATTTAGATGGACGGAGAGCTAGATTTTCCCATCAATTGGTGTCATATGCTGAAGACCATATTGGGAAGCAGGAAGGAAATGATTGGATAGGAGGCGTGGGTAACCATAAAGATGCATTTTTGCCAGTATATGCAAATTTACTCGGTTTTTATTCTCTTTCTAACTGCATTTTCCTTGTATCTGGCAATAATGATGCCAAACCACTTCTATCTGATGTAGTTGTTGTCGGAAGAGCCATCAATCCATTTCTTAGAAACCCTTTAATTTCTAACCTATTTAAGTTAGTCATACAATCACATAAGAAAATGGCCGGTGATGTTGCTAACGGCTTGTCCCCTGAGATGGGAAATTGCTCTATCTGGGATAGTTTTAATCCGTATTTTCTTCTTGGCTAG
>Glyma19g02555.1 sequence type=predicted peptide gene model=Glyma19g02555 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSAKWRALQHRHRYTYTAVVFPPSFLSSLPLLLSDDPLLSAFHSSLLHFTSLSSTLSQLSQTKHLANTFLHLLQSQPKPPSEAEPFLLASSLYLHLLFLENSHPLHKTLLSPLANTTPFRSTLAASFETLLHTKTFPRFSVSRAALSVLGLPKLDYLAAVVENCGVLVAYDAVNGLDGVISETSRPSPVVMEQCQEALSCLYYLLQKFPSKFREGCECDVMEGIVSVVLGVLSSTAFSRDCFVAAGVALCAAFQVCVSKQELGLVLIRGVFNSNLQGLDSDGGGCCDGDIGEVRDVIGRIPCKGDLYLGIFGLSVLSRLCLIRGILTAISRDLLNAHFSGVSGVKTVLYDGVLPELCRHCENPVDSHFNFHALTVMQICLQQIKTSLLSNLTDLSGEYEPIPEEMGMRILKIIWNNLEDPLSQTVKQVHLIFDLFLDIQFSLCEGGDRIKEFLVKIGSDLLSLGSRCKGRYVPLALLTKRLGARKMLDMSPDLLFETMRAYVDDDVCCAATSFLKCFLECLRDEFWESDGIEGGYVFYRGHCLPPVLYGLASEFSKLRTNLNTYALPVLLEVDVDSIFPMLSFISVGPNGDENGLQYPELVYVDMEVNLEQRIAILVSLLKVSRSLALVEGDIDWAENPLANIKEPGLGTDSHAIVCIKGINVKIHVQWLVNALTHVDESLRVDAAELLFLNPKTASLPSHLELTLMKEAVPLNMRCCFSAFQMKWSSLFRKFFSRVRTALERQFKQGNWNPLECNEGSEVFCPSKGNNDLTIKRADDLFHFMRWLSGFLFFSCYPSAPYKRKIMAMDLILIMINVWSIKSSSSLEFNSSLPGSHLNPYSKGMTSSDSTLLLVGSIVDSWDRLRENSFHILLHFPSPLPGISNEDTLKKLIASSMKLVCSPRVRESDAGALSLRLIFKKYVLELGWLIEDSFKVVHLSSKSELVNEVNQFNKFRNPVILYLKSMIDWLDAAVRDGEQDLSKACKNSFVHGVLLALRYTFEELDWNSNVISASISELRYLLERLLDLVVRITSLALWVVSSDAWHLPEDMDEMLDEDSLLMEIPDHECMPSSEYENNNSKPSHDGRSSDQIVMVGCWLAMKEVSLLLGTIIRKVPLPSNACSDLSELEEPSVDTAGFSSDSVLDLEQLKTIGNHFLEVLLKMKHNGAIDKTRAGFTALCNRLLCSSDSRLHRLTESWMEQLMQRTVAKGQVVDDLLRRSAGIPAAFIALFLSEPEGTPKKLLPRALRWLIDVGNGSMLNQTKSNSLNGDPCKPNDSANGNNYALSAERNVRQMLSKIRDEGVIPTVHAFNVLRAAFNDSNLATDTSGFSAEALILSIRSFSSPHWEIRNSACLAYTALVRRMIGFLNIHKRESARRAITGLEFFHRYPALHSFLFNELEVATEFLGCASSADLESIRGNNLHPSLYPILILLSRLKPSSIAGETGDELDPFLFMPWIRRCSTQSNLRVRVLASRALTSIVSNEKLPSVLFNIASDLPCVDKLVKSTNFPISFNFIHGILLQLSALLDINCKGLADNSKKDHIIGELIQILVLRSWIARPTHCQCPILNETFLRVLDQMLNIARTCQITKHFYSISKLLLELSTECLDVESYGSSYYDPTIAELREQAAIFYFGCFFQASIDEEEIIHLPVRHSLPTSESLPEHEIENTSLSLLDRLICCLSDSLYEVRLATLKWLLKLLKASEPCGKVYDLFHNDIRAVELWAKTNLNGTLVKILASEKNHKCKYNILRILVAWNLLQFEKASHDKCSGTNYVGEMDFDSVFQFWNEIVSLYKQTRHAKTQETLVRCLGVCTKRITMLFASSILSNERIEFLVCGEINQEEMLSWLFDCIVFFCNMIKQRSSSSEPASMRQAAAESLIASGLLEQAGLLGSFVLNNQIPLGTSSSCFVKNEAVNLYAHQVLDAWFSCMKLLEDEDDSVRLRLSSDVQKCFTTEKTRSNLTTGSVPIQVDRVIRFCFDHLSSIFGHWIDYFDYLCQWVLRAESCVAPQGDLVRRVFDKEIDNHYEEKLLISQICCSNMEKLPILKSWADKDEFRSYLDGRRARFSHQLVSYAEDHIGKQEGNDWIGGVGNHKDAFLPVYANLLGFYSLSNCIFLVSGNNDAKPLLSDVVVVGRAINPFLRNPLISNLFKLVIQSHKKMAGDVANGLSPEMGNCSIWDSFNPYFLLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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