Glyma19g02540 - SoyBase

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Report for Sequence Feature Glyma19g02540

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2351222
stop:	2355876
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26830	AT	Annotation by Michelle Graham. TAIR10: cullin 3 \| chr1:9296063-9298374 FORWARD LENGTH=732	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0031461	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cullin-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0031625	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding	SoyBase	N/A	ISS
KOG2166	KOG	Cullins	JGI		ISS
PTHR11932	Panther	CULLIN	JGI		ISS
PF00888	PFAM	Cullin family	JGI		ISS
PF10557	PFAM	Cullin protein neddylation domain	JGI		ISS
UniRef100_G7LAY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cullin 3-like protein n=1 Tax=Medicago truncatula RepID=G7LAY4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N643	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N643_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g02540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g02540

Paralog	Evidence	Comments
Glyma13g05310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g02540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g021600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02540

Limit To All Plant Sequences

>Glyma19g02540.1   sequence type=CDS   gene model=Glyma19g02540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACGCAGAAGAAGCGAGCGTTACAGATAGAGGCGTTTAGGCACCGCATCGTGGTGGATCCCAAGTACGCCGAGAAGACGTGGAAAGTTCTGGAACACGCTATTCATGAGATATATAATCACAACGCTAGTGGCCTTAGCTTTGAAGAGCTTTACAGGAATGCTTATAATATGGTGTTATACAAATTTGGGGAGAAACTTTACACAGGACTTGTGACGACCATGACTTCTCATCTAAAAGAAATTTCTCAATCAATTGAATCTGCTCAAGGAGAAATTTTCTTGGAAGAGCTCAACAGGAAGTGGGTAGATCATAACAAGGCATTACAAATGATCCGAGATATACTGATGTACATGGATCGAACGTTTATACCAAGCAACCATAAAACTCCTGTTCACGAGCTTGGATTGAATCTTTGGAGAGATGTTGTGATCCATTCCAGCAAAACTAAGGCTAGGCTTCTAGATACTCTTCTTGAACTTGTGCTTAGAGAAAGGAATGGTGAAGTAATAAACAGAGGATTGATGAGAAATATAATAAAGATGCTTATGGATTTGGGTTTGCCTGTTTACCAACAGGACTTTGAGAAGCATTTTCTTGATGTTTCAGCAAATTTTTACTGTCGTGAGTCCCAGAAATTCATTGAATCATGTGATTGTGGTGATTATTTGAAGAAAGCTGAGAGACGGTTAAATGAAGAAATGGAGAGAGTATCTCACTACTTGGATCCTAGAAGCGAGTCAAAGATAACTAATGTGGTGGAGAAGGAAATGATTGAGAGTCATATGCACACTCTAGTTCACATGGAGAACTCAGGCCTGGTTAGTATGCTTGTGGATGACAAATATGAAGACTTGCAAAGAATGTATAACTTATTTCGCCGGGTGTCTGATGGGCTCACAATTGTTAAAGATGTCATGACCTCTTTTGTACGGGATACAGGCAAGCAGCTAATTATGGATCCTGAAAGGTTGAGAGATCCTGTGGATTTTGTTCAACGTCTCTTGGATTTGAAGGATAAATATGACAGGGTTATTACTATGTCATTTAACAACGACAAGACATTTCAGAATGCCTTGAATTCCTCTTTTGAATATTTCATCAATTTGAATGCCCGGTCTCCAGAGTTCATTTCTTTGTTTGTGGATGACAAACTTCGCAGAGGGTTGAAAGGGGTTGGTGAGGAGGATGTGGAGATTGTACTAGACAAAGTCATGATGCTTTTCAGATACCTACAAGAGAAGGATGTGTTTGAGAAGTATTACAAGCAACACTTGGCAAAAAGGCTTCTTTCAGGGAAGACTATATCCGATGATGCAGAAAGGAGTTTGATTGTTAAGCTCAAAACAGAATGTGGATATCAATTCACTTCTAAGTTAGAGGGTATGTTTACTGACATGAAAACTTCTCATGATACGATGCAGGGCTTCTATGCAAACCTTGGCACTGAGTTGGGGGATGGCCCTATGCTATCTGTCCAGGTGCTTACGACAGGATCATGGCCTACTCAACCTAGCCCGCCGTGTAATCTTCCTGTAGAAATACTGGGTGTATGTGATAAGTTTCGGACATATTATCTTGGCACCCATAATGGTAGGAGATTGTCCTGGCAAACTAATATGGGGACTGCTGATTTGAAAGCAACATTTGGTAAGGGCCAAAAGCATGAGTTGAATGTTTCCACATATCAAATGTGTGTACTCATGCTTTTCAACAGCGCTGAGCGGTTGACTTGTAAGGAGATAGAGCAGGCTACAGCAATACCCATGTCAGATTTGAGGAGGTGCCTTCAGTCTCTGGCCTGTGTCAAAGGAAAAAATGTTCTTCGAAAAGAGCCGATGAGCAAGGACATAGCTGAGGATGATGCATTCTTCTTTAATGACAAATTCACCAGCAAGTTCTTTAAGGTAAAGATAGGGACTGTTGTTGCACAGAGGGAGTCTGAACCAGAAAACCTAGAAACTCGGCAAAGAGTGGAAGAAGACAGAAAGCCACAGATCGAAGCAGCCATTGTGAGGATAATGAAGTCTAGGCGGACTCTAGATCATAATAATATTGTTGCTGAGGTCACAAAGCAGCTGCAGTCACGGTTTTTGCCTAATCCTGTTGTTATTAAGAAGAGGATTGAATCCCTTATTGAGCGTGAGTTTTTGGAGAGGGATAAAGTGGACAGAAAACTGTACCGCTATCTTGCTTGA

Predicted protein sequences of Glyma19g02540

Limit To All Plant Sequences

>Glyma19g02540.1   sequence type=predicted peptide   gene model=Glyma19g02540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTQKKRALQIEAFRHRIVVDPKYAEKTWKVLEHAIHEIYNHNASGLSFEELYRNAYNMVLYKFGEKLYTGLVTTMTSHLKEISQSIESAQGEIFLEELNRKWVDHNKALQMIRDILMYMDRTFIPSNHKTPVHELGLNLWRDVVIHSSKTKARLLDTLLELVLRERNGEVINRGLMRNIIKMLMDLGLPVYQQDFEKHFLDVSANFYCRESQKFIESCDCGDYLKKAERRLNEEMERVSHYLDPRSESKITNVVEKEMIESHMHTLVHMENSGLVSMLVDDKYEDLQRMYNLFRRVSDGLTIVKDVMTSFVRDTGKQLIMDPERLRDPVDFVQRLLDLKDKYDRVITMSFNNDKTFQNALNSSFEYFINLNARSPEFISLFVDDKLRRGLKGVGEEDVEIVLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTISDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSHDTMQGFYANLGTELGDGPMLSVQVLTTGSWPTQPSPPCNLPVEILGVCDKFRTYYLGTHNGRRLSWQTNMGTADLKATFGKGQKHELNVSTYQMCVLMLFNSAERLTCKEIEQATAIPMSDLRRCLQSLACVKGKNVLRKEPMSKDIAEDDAFFFNDKFTSKFFKVKIGTVVAQRESEPENLETRQRVEEDRKPQIEAAIVRIMKSRRTLDHNNIVAEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA*

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