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Report for Sequence Feature Glyma19g02520

Feature Type:gene_model
Chromosome:Gm19
Start:2306077
stop:2316572
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g02520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28860AT Annotation by Michelle Graham. TAIR10: ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252 SoyBaseE_val: 0ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0006200GO-bp Annotation by Michelle Graham. GO Biological Process: ATP catabolic process SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0007389GO-bp Annotation by Michelle Graham. GO Biological Process: pattern specification process SoyBaseN/AISS
GO:0008361GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell size SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0009958GO-bp Annotation by Michelle Graham. GO Biological Process: positive gravitropism SoyBaseN/AISS
GO:0010015GO-bp Annotation by Michelle Graham. GO Biological Process: root morphogenesis SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010540GO-bp Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport SoyBaseN/AISS
GO:0010541GO-bp Annotation by Michelle Graham. GO Biological Process: acropetal auxin transport SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048440GO-bp Annotation by Michelle Graham. GO Biological Process: carpel development SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0048527GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root development SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0010329GO-mf Annotation by Michelle Graham. GO Molecular Function: auxin efflux transmembrane transporter activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
KOG0055 KOG Multidrug/pheromone exporter, ABC superfamily JGI ISS
PTHR24221Panther FAMILY NOT NAMED JGI ISS
PTHR24221:SF96Panther JGI ISS
PF00005PFAM ABC transporter JGI ISS
PF00664PFAM ABC transporter transmembrane region JGI ISS
UniRef100_B9RUP8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein 1, 2, putative n=1 Tax=Ricinus communis RepID=B9RUP8_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N641UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N641_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g02520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02520 not represented in the dataset
Glyma19g02520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g02520
ParalogEvidenceComments
Glyma13g05300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g02520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g021500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g02520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g02520
>Glyma19g02520.1   sequence type=CDS   gene model=Glyma19g02520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGCTGCTGAGCCTAATAAAGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGACACTACCCTTTTACAAGCTCTTCTCATTTGCAGACAAGTGTGATTGGATGCTCATGATCTCTGGCAGCATAGGAGCTATTATTCATGGCTCATCCATGCCGGTTTTCTTCCTCCTCTTTGGTGAAATGGTTAATGGCTTTGGCAAAAACCAAATGAACTTGAAGAAAATGACAGAAGAAGTATCAAAGTATGCTCTCTATTTCGTGTACCTTGGCCTTGTCGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGGCAAGTGAGCACACTGAGAAAGAAGTACTTGGAGGCAGTGCTTAAACAAGACGTTGGTTTCTTTGACACGGATGCAAGAACAGGAGATATTGTTTTCAGTGTTTCCACAGATACTCTTCTAGTTCAAGACGCTATAAGCGAGAAGGTGGGGAACTTCATACACTATCTATCAACGTTTCTGGCTGGTCTAGTGGTTGGTTTTGTTTCAGCATGGAGGCTTGCACTTCTGAGTGTTGCAGTGATTCCTGGGATTGCCTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCGAAGAGTCGAGAATCTTATGCGAATGCTGGCATCATCGCCGAGCAGGCAATTGCTCAAGTTAGAACAGTTTACTCTTATGTTGGTGAGAGCAAGGCATTGAATTCTTATTCCGATGCAATACAAAACACATTGAAGCTTGGATACAAGGCAGGGATGGCCAAAGGTTTAGGCCTGGGATGCACATATGGAATAGCTTGCATGTCTTGGGCACTAGTTTTCTGGTATGCTGGAGTTTTCATCAGAAATGGACAAACAGATGGTGGCAAGGCGTTCACCGCTATTTTCTCGGCCATTGTTGGTGGCATGAGTTTGGGACAGTCATTTTCGAACTTAGGCGCTTTCAGCAAAGGCAAAGCTGCTGGATACAAATTGATGGAAATCATCAATCAGAAACCAACCATAGTGGAAGATCCATCGGAAGGAAAGTGCTTAGCTGAGGTTAATGGCAACATTGAATTTAAGGATGTCACTTTCAGCTACCCTTCGAGGCCGGATATGTTTATCTTTCGCAATTTCTCAATCTTTTTCCCTGCTGGTAAAACTGTTGCAGTTGTTGGTGGTAGTGGATCTGGAAAAAGCACAGTTGTTTCCTTGATAGAAAGGTTCTACGATCCAAATGAAGGTCAGGTTCTGCTGGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGTGATCAAATTGGGTTGGTGAATCAAGAACCTGCACTCTTTGCAACTACCATTCTTGAGAATATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTGGAGGCTGCTACTTCTGCTGCAAATGCTCATAGCTTTATTACCTTACTTCCTAATGGCTATAACACTCAGGTAGGAGAGCGAGGAGTTCAATTATCTGGGGGCCAAAAGCAGAGAATTGCTATTGCTAGAGCTATGTTGAAAAATCCAAAAATCCTTCTATTAGATGAAGCTACTAGTGCTCTTGATGCAGGGTCTGAAAACATTGTTCAAGAGGCACTAGACAGGCTCATGGTTGGAAGAACAACCGTGGTTGTTGCACATCGTCTATCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGCCAAGTTGTTGAGACAGGCGCACATGAAGAACTCATTGCCAAGGCAGGCACCTATGCCTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGGGACTTCTCCAACCCATCAACTCGCCGGACACGGTCATCTCGCTTGAGCCATTCATTGTCAACCAAGTCCTTAAGCCTCCGGTCTGGAAGCTTGAGGAACTTGAGCTACCAGTATAGCACCGGAGCCGATGGCCGCATTGAGATGATATCAAATGCTGAAACAGACAAGAAAAATCCTGCCCCAGATGGATATTTCTTCAGGTTGCTCAAGATGAATGCTCCTGAATGGCCTTACTCAATCATGGGAGCTGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCAACTTTTGCTATTGTTATGAGCAACATGATTGAGGTCTTTTACTTCAGTAATTATGCATCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATTTACATTGGTGCTGGTCTCTATGCTGTTGGTGCATACTTGATACAACATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACAGATGCAGCTGATGTCAAGTCTGCCATTGCTGAGAGGATATCAGTGATTCTACAGAACATGACATCTCTCCTTACTTCTTTCATAGTTGCTTTCATAGTTGAATGGAGGGTTTCCTTGCTCATCTTGGCAACTTTCCCTCTCCTTGTTCTAGCCAATTTTGCTCAGCAACTATCTCTAAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACAAGTATGATAGCAGGAGAGGGAGTGAGCAACATCAGAACAGTTGCAGCATTCAATGCTCAGAACAAGATGTTATCGGTGTTCTGCCACGAGCTCCGAGTGCCTCAGAGCCAGAGCCTGCGCCGGAGCCTGACATCCGGCTTCTTGTTCGGTCTCTCTCAGCTTGCCCTCTATGCCTCCGAGGCTCTCATTCTATGGTATGGTGCACATTTGGTCAGCAAAGGTGTTTCAACCTTCTCAAAGGTCATCAAGGTGTTTGTGGTCCTAGTGATCACTGCGAATTCGGTGGCTGAAACCGTGAGCCTTGCACCGGAGATTATTCGCGGTGGCGAAGCTGTTGGTTCAGTGTTCTCAATCCTCGATCGATCAACAAGAATTGACCCTGATGATCCTGATGCTGATCCGGTTGAATCGCTTCGCGGGGAAATTGAGCTCAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATTTTAACCTTAGGATCCGTGCAGGCCAGAGTCAGGCTCTTGTGGGGGCAAGTGGTTCGGGGAAGAGTTCTGTTATTGCATTGATTGAGAGATTCTATGACCCTATTGCTGGAAAAGTGATGGTGGATGGAAAGGACATTAGGAAGTTGAACTTGAAGTCTTTGAGGCTTAAAATTGGGTTGGTGCAGCAAGAGCCAGCACTTTTTGCAGCAAGCATTTTCGAGAACATTGCATATGGGAAAGAAGGTGCAACCGAGGCTGAGGTGATTGAGGCCGCGCGTGCTGCGAACGTGCACGGATTTGTGAGTGGTTTGCCTGAAGGTTACAAGACACCGGTTGGCGAGAGAGGCGTGCAACTCTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGAGCCGTGCTTAAGGACCCCACAATTCTTCTACTAGATGAGGCCACAAGTGCACTTGATGCTGAGTCCGAGTGTGTGCTACAAGAGGCCTTGGAGAGGCTAATGAGGGGTCGCACCACGGTGCTCGTGGCTCATCGTTTGTCAACCATTAGAGGGGTTGATTGCATTGGTGTGGTTCAAGATGGGCGCATTGTGGAGCAAGGTAGCCATTCTGAACTTGTCAGCAGGCATGAGGGGGCATATTCTAGACTCTTGCAGCTACAACATCATCACATATGA
Predicted protein sequences of Glyma19g02520
>Glyma19g02520.1   sequence type=predicted peptide   gene model=Glyma19g02520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEAAEPNKALPEAEKKKEQTLPFYKLFSFADKCDWMLMISGSIGAIIHGSSMPVFFLLFGEMVNGFGKNQMNLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDMFIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGAHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFSNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQSQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRHEGAYSRLLQLQHHHI*






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