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Report for Sequence Feature Glyma19g02520
Feature Type: gene_model
Chromosome: Gm19
Start: 2306077
stop: 2316572
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g02520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G28860 AT
Annotation by Michelle Graham. TAIR10: ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252
SoyBase E_val: 0 ISS
GO:0000271 GO-bp
Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process
SoyBase N/A ISS
GO:0006200 GO-bp
Annotation by Michelle Graham. GO Biological Process: ATP catabolic process
SoyBase N/A ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0007389 GO-bp
Annotation by Michelle Graham. GO Biological Process: pattern specification process
SoyBase N/A ISS
GO:0008361 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell size
SoyBase N/A ISS
GO:0009637 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to blue light
SoyBase N/A ISS
GO:0009639 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to red or far red light
SoyBase N/A ISS
GO:0009640 GO-bp
Annotation by Michelle Graham. GO Biological Process: photomorphogenesis
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009825 GO-bp
Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth
SoyBase N/A ISS
GO:0009926 GO-bp
Annotation by Michelle Graham. GO Biological Process: auxin polar transport
SoyBase N/A ISS
GO:0009932 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell tip growth
SoyBase N/A ISS
GO:0009958 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive gravitropism
SoyBase N/A ISS
GO:0010015 GO-bp
Annotation by Michelle Graham. GO Biological Process: root morphogenesis
SoyBase N/A ISS
GO:0010048 GO-bp
Annotation by Michelle Graham. GO Biological Process: vernalization response
SoyBase N/A ISS
GO:0010218 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to far red light
SoyBase N/A ISS
GO:0010540 GO-bp
Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport
SoyBase N/A ISS
GO:0010541 GO-bp
Annotation by Michelle Graham. GO Biological Process: acropetal auxin transport
SoyBase N/A ISS
GO:0010817 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels
SoyBase N/A ISS
GO:0040007 GO-bp
Annotation by Michelle Graham. GO Biological Process: growth
SoyBase N/A ISS
GO:0043481 GO-bp
Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light
SoyBase N/A ISS
GO:0048364 GO-bp
Annotation by Michelle Graham. GO Biological Process: root development
SoyBase N/A ISS
GO:0048440 GO-bp
Annotation by Michelle Graham. GO Biological Process: carpel development
SoyBase N/A ISS
GO:0048443 GO-bp
Annotation by Michelle Graham. GO Biological Process: stamen development
SoyBase N/A ISS
GO:0048527 GO-bp
Annotation by Michelle Graham. GO Biological Process: lateral root development
SoyBase N/A ISS
GO:0048765 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation
SoyBase N/A ISS
GO:0048767 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair elongation
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0071555 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall organization
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0010329 GO-mf
Annotation by Michelle Graham. GO Molecular Function: auxin efflux transmembrane transporter activity
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
GO:0042626 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances
SoyBase N/A ISS
KOG0055
KOG
Multidrug/pheromone exporter, ABC superfamily
JGI ISS
PTHR24221 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24221:SF96 Panther
JGI ISS
PF00005 PFAM
ABC transporter
JGI ISS
PF00664 PFAM
ABC transporter transmembrane region
JGI ISS
UniRef100_B9RUP8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein 1, 2, putative n=1 Tax=Ricinus communis RepID=B9RUP8_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N641 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N641_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g02520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g02520
Paralog Evidence Comments
Glyma13g05300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g02520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g021500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g02520
Coding sequences of Glyma19g02520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g02520.1 sequence type=CDS gene model=Glyma19g02520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAAGCTGCTGAGCCTAATAAAGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGACACTACCCTTTTACAAGCTCTTCTCATTTGCAGACAAGTGTGATTGGATGCTCATGATCTCTGGCAGCATAGGAGCTATTATTCATGGCTCATCCATGCCGGTTTTCTTCCTCCTCTTTGGTGAAATGGTTAATGGCTTTGGCAAAAACCAAATGAACTTGAAGAAAATGACAGAAGAAGTATCAAAGTATGCTCTCTATTTCGTGTACCTTGGCCTTGTCGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGGCAAGTGAGCACACTGAGAAAGAAGTACTTGGAGGCAGTGCTTAAACAAGACGTTGGTTTCTTTGACACGGATGCAAGAACAGGAGATATTGTTTTCAGTGTTTCCACAGATACTCTTCTAGTTCAAGACGCTATAAGCGAGAAGGTGGGGAACTTCATACACTATCTATCAACGTTTCTGGCTGGTCTAGTGGTTGGTTTTGTTTCAGCATGGAGGCTTGCACTTCTGAGTGTTGCAGTGATTCCTGGGATTGCCTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCGAAGAGTCGAGAATCTTATGCGAATGCTGGCATCATCGCCGAGCAGGCAATTGCTCAAGTTAGAACAGTTTACTCTTATGTTGGTGAGAGCAAGGCATTGAATTCTTATTCCGATGCAATACAAAACACATTGAAGCTTGGATACAAGGCAGGGATGGCCAAAGGTTTAGGCCTGGGATGCACATATGGAATAGCTTGCATGTCTTGGGCACTAGTTTTCTGGTATGCTGGAGTTTTCATCAGAAATGGACAAACAGATGGTGGCAAGGCGTTCACCGCTATTTTCTCGGCCATTGTTGGTGGCATGAGTTTGGGACAGTCATTTTCGAACTTAGGCGCTTTCAGCAAAGGCAAAGCTGCTGGATACAAATTGATGGAAATCATCAATCAGAAACCAACCATAGTGGAAGATCCATCGGAAGGAAAGTGCTTAGCTGAGGTTAATGGCAACATTGAATTTAAGGATGTCACTTTCAGCTACCCTTCGAGGCCGGATATGTTTATCTTTCGCAATTTCTCAATCTTTTTCCCTGCTGGTAAAACTGTTGCAGTTGTTGGTGGTAGTGGATCTGGAAAAAGCACAGTTGTTTCCTTGATAGAAAGGTTCTACGATCCAAATGAAGGTCAGGTTCTGCTGGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGTGATCAAATTGGGTTGGTGAATCAAGAACCTGCACTCTTTGCAACTACCATTCTTGAGAATATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTGGAGGCTGCTACTTCTGCTGCAAATGCTCATAGCTTTATTACCTTACTTCCTAATGGCTATAACACTCAGGTAGGAGAGCGAGGAGTTCAATTATCTGGGGGCCAAAAGCAGAGAATTGCTATTGCTAGAGCTATGTTGAAAAATCCAAAAATCCTTCTATTAGATGAAGCTACTAGTGCTCTTGATGCAGGGTCTGAAAACATTGTTCAAGAGGCACTAGACAGGCTCATGGTTGGAAGAACAACCGTGGTTGTTGCACATCGTCTATCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGCCAAGTTGTTGAGACAGGCGCACATGAAGAACTCATTGCCAAGGCAGGCACCTATGCCTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGGGACTTCTCCAACCCATCAACTCGCCGGACACGGTCATCTCGCTTGAGCCATTCATTGTCAACCAAGTCCTTAAGCCTCCGGTCTGGAAGCTTGAGGAACTTGAGCTACCAGTATAGCACCGGAGCCGATGGCCGCATTGAGATGATATCAAATGCTGAAACAGACAAGAAAAATCCTGCCCCAGATGGATATTTCTTCAGGTTGCTCAAGATGAATGCTCCTGAATGGCCTTACTCAATCATGGGAGCTGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCAACTTTTGCTATTGTTATGAGCAACATGATTGAGGTCTTTTACTTCAGTAATTATGCATCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATTTACATTGGTGCTGGTCTCTATGCTGTTGGTGCATACTTGATACAACATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACAGATGCAGCTGATGTCAAGTCTGCCATTGCTGAGAGGATATCAGTGATTCTACAGAACATGACATCTCTCCTTACTTCTTTCATAGTTGCTTTCATAGTTGAATGGAGGGTTTCCTTGCTCATCTTGGCAACTTTCCCTCTCCTTGTTCTAGCCAATTTTGCTCAGCAACTATCTCTAAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACAAGTATGATAGCAGGAGAGGGAGTGAGCAACATCAGAACAGTTGCAGCATTCAATGCTCAGAACAAGATGTTATCGGTGTTCTGCCACGAGCTCCGAGTGCCTCAGAGCCAGAGCCTGCGCCGGAGCCTGACATCCGGCTTCTTGTTCGGTCTCTCTCAGCTTGCCCTCTATGCCTCCGAGGCTCTCATTCTATGGTATGGTGCACATTTGGTCAGCAAAGGTGTTTCAACCTTCTCAAAGGTCATCAAGGTGTTTGTGGTCCTAGTGATCACTGCGAATTCGGTGGCTGAAACCGTGAGCCTTGCACCGGAGATTATTCGCGGTGGCGAAGCTGTTGGTTCAGTGTTCTCAATCCTCGATCGATCAACAAGAATTGACCCTGATGATCCTGATGCTGATCCGGTTGAATCGCTTCGCGGGGAAATTGAGCTCAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATTTTAACCTTAGGATCCGTGCAGGCCAGAGTCAGGCTCTTGTGGGGGCAAGTGGTTCGGGGAAGAGTTCTGTTATTGCATTGATTGAGAGATTCTATGACCCTATTGCTGGAAAAGTGATGGTGGATGGAAAGGACATTAGGAAGTTGAACTTGAAGTCTTTGAGGCTTAAAATTGGGTTGGTGCAGCAAGAGCCAGCACTTTTTGCAGCAAGCATTTTCGAGAACATTGCATATGGGAAAGAAGGTGCAACCGAGGCTGAGGTGATTGAGGCCGCGCGTGCTGCGAACGTGCACGGATTTGTGAGTGGTTTGCCTGAAGGTTACAAGACACCGGTTGGCGAGAGAGGCGTGCAACTCTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGAGCCGTGCTTAAGGACCCCACAATTCTTCTACTAGATGAGGCCACAAGTGCACTTGATGCTGAGTCCGAGTGTGTGCTACAAGAGGCCTTGGAGAGGCTAATGAGGGGTCGCACCACGGTGCTCGTGGCTCATCGTTTGTCAACCATTAGAGGGGTTGATTGCATTGGTGTGGTTCAAGATGGGCGCATTGTGGAGCAAGGTAGCCATTCTGAACTTGTCAGCAGGCATGAGGGGGCATATTCTAGACTCTTGCAGCTACAACATCATCACATATGA
Predicted protein sequences of Glyma19g02520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g02520.1 sequence type=predicted peptide gene model=Glyma19g02520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEAAEPNKALPEAEKKKEQTLPFYKLFSFADKCDWMLMISGSIGAIIHGSSMPVFFLLFGEMVNGFGKNQMNLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDMFIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGAHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFSNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQSQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRHEGAYSRLLQLQHHHI*