Glyma19g02460 - SoyBase

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Report for Sequence Feature Glyma19g02460

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2193443
stop:	2198815
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28760	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 390 Blast hits to 390 proteins in 131 species: Archae - 144; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). \| chr3:10793126-10795304 REVERSE LENGTH=422	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
PF01959	PFAM	3-dehydroquinate synthase (EC 4)	JGI		ISS
UniRef100_G7IDE5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-dehydroquinate synthase n=1 Tax=Medicago truncatula RepID=G7IDE5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N635	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N635_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g02460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g02460

Paralog	Evidence	Comments
Glyma13g05250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g02460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g020800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02460

Limit To All Plant Sequences

>Glyma19g02460.1   sequence type=CDS   gene model=Glyma19g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGTTGTCTCATGTTTGCAGTTGCATCTCACACTCCACTCTCTTCACTTCAACTGCACCTTCTTCATCTCTATCTGTTTCACCAACCACTTTCCTTCAATTGTCTTCGTTCTCCACCGAGTCAACGTGGAACAACATTCGTAGAACAAACCTTTGTTCCAACGTTAATTCTCTTCGTTATTCTGGGAAGACCCTTTTGCGGCATAGGCATAAATATTACAACCCTTGTTCTTCAATGGCTTCATCGTTGGATGAGAGTGGTAAACGATCCAAGAGAGTTTGGATATGGACCAGCAACAAGCAGGTCATGACTGCAGCAGTAGAGAGAGGATGGAACACTTTCGTTTTCCCATCACACCATCGACAACTTGCTCATGATTGGTCTTCCATTGCGGTAATATGCCCTCTTTTTGTTAATGAGGGAGAGGTTTTGGATGGACAGAATAAAAGGGTAGCCACAATTTTTGACGTTTCAACCCCGGAGGAACTAGAGGAACTTAGACCAGAGAATGAGCAGGCAGAGAATATTGTAGTTAATTTACTAGATTGGCAGGTAATACCTGCTGAAAATATAATAGCTGCATTTCAAAGAAGCCAAAATACTGTGTTTGCCATCTCTAATAATACATCTGAAGCTCAGGTGTTTCTTGAGGCACTTGAACATGGTTTAGATGGCATAATTATGAAAGTTGAAGATGTTGAACCTGTTCTCGAGCTAAAGGAATATTTCGACAGAAGAATGGAAGAAAGCAATCTACTGAGCTTGACCAAAGCCACTGTAACACATATTCAAGCAGCTGGAATGGGTGATCGCGTTTGTGTAGATCTCTGCAGTCTCATGAGACCTGGTGAAGGACTTCTTGTTGGATCTTTTGCCAGAGGATTATTTCTTGTTCACTCGGAATGCTTGGAGTCAAATTACATTGCAAGCAGGCCGTTTCGGGTGAATGCAGGACCAGTGCATGCCTATGTTGCTGTTCCAGGAGGCAGAACATGCTACCTGTCAGAATTAAAATCAGGAAAAGAAGTGATTATAGTTGATCATCAGGGTCGGCAACGAATTGCAATTGTTGGGCGTGTAAAGATAGAAAGTAGACCACTAATCCTTGTGGAGGCAAAGATAGAATCAGATAATCAATCTATCAGCATCCTTTTACAGAATGCTGAAACAGTTGCCTTGGTTTGTACACCACAAGGAAATACACTGTTAAAAACATCCATTCCTGTGACCTCACTAAAAGTTGGAGATGAAATTCTGTTGAGAGTACAAGGAGGTGCTCGGCATACAGGAATAGAGATTCAAGAATTTATAGTTGAGAAATGA

Predicted protein sequences of Glyma19g02460

Limit To All Plant Sequences

>Glyma19g02460.1   sequence type=predicted peptide   gene model=Glyma19g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVLSHVCSCISHSTLFTSTAPSSSLSVSPTTFLQLSSFSTESTWNNIRRTNLCSNVNSLRYSGKTLLRHRHKYYNPCSSMASSLDESGKRSKRVWIWTSNKQVMTAAVERGWNTFVFPSHHRQLAHDWSSIAVICPLFVNEGEVLDGQNKRVATIFDVSTPEELEELRPENEQAENIVVNLLDWQVIPAENIIAAFQRSQNTVFAISNNTSEAQVFLEALEHGLDGIIMKVEDVEPVLELKEYFDRRMEESNLLSLTKATVTHIQAAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVAVPGGRTCYLSELKSGKEVIIVDHQGRQRIAIVGRVKIESRPLILVEAKIESDNQSISILLQNAETVALVCTPQGNTLLKTSIPVTSLKVGDEILLRVQGGARHTGIEIQEFIVEK*

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