Glyma19g02450 - SoyBase

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Report for Sequence Feature Glyma19g02450

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2189315
stop:	2192802
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47800	AT	Annotation by Michelle Graham. TAIR10: Galactose mutarotase-like superfamily protein \| chr3:17634971-17636998 FORWARD LENGTH=358	SoyBase	E_val: 1.00E-125	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0019318	GO-bp	Annotation by Michelle Graham. GO Biological Process: hexose metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004034	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldose 1-epimerase activity	SoyBase	N/A	ISS
GO:0016853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isomerase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG1604	KOG	Predicted mutarotase	JGI		ISS
PTHR10091	Panther	ALDOSE-1-EPIMERASE	JGI		ISS
PF01263	PFAM	Aldose 1-epimerase	JGI		ISS
UniRef100_G7KZW8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldose 1-epimerase n=2 Tax=Medicago truncatula RepID=G7KZW8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N634	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N634_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g02450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g02450

Paralog	Evidence	Comments
Glyma13g05240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g02450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g020700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02450

Limit To All Plant Sequences

>Glyma19g02450.1   sequence type=CDS   gene model=Glyma19g02450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAAGATCTTTGTGCTGTTATGTCTGCTCTTCTTAGCTTCTTCTGGGTTTGTCCATGGCTCTTCTAAGAAGGATCATATTAGGTTATTTGAGCTCAAGAAAGGTGATTTTTCTATAAAGGTCACCAATTGGGGTGCAACACTTGTGTCCGTAATACTTCCCGATAAGAATGGGAAGTTGGGTGATATTGTTCTTGGATATGATTCTCCCAAGGCATACACAAATGATACATCATACTTTGGAGCTACTGTGGGCCGGGTTGCTAACAGAATTGGAGGAGCTCAGTTCACTCTAAATGGAATCCATTACAAATTAGTTGCTAATGAAGGAAACAACACACTTCATTCTGGACCCAAAGCATTCAGTGATGTTCTTTGGAAAGTGACAAGGTACATAAAAGATGATGACAAACCCAGAATCACCTTCAGTTATCACAGTTATGATGGTGAAGGAGGATTTCCTGGGGACCTCCTAGTAACTGTGAGCTACATTCTTGGGAAAAACTCATTAAGCATAATCATGAAAGCAAAAGCTCTGAACAAGCCTACCCCAGTGAACATGGTGAACCATGCTTACTGGAACCTAGGAAACCACAACAGTGGCAACATTCTAGATGAAGTGGTTCAGATCTTTGGATCCCAAGTCACACTATTTGATGACAATCTCATTCCCACAGGCCAATATGCCTCAGTTAGAGGAACCCCAAATGATTTCCTTGAGCCACACATTGTTGGAGAAAGGATCAACCAATTGCCTAAGACAAATGGCTATAACATCAACTATGTGCTTGATGGTGAAAAAGGCAATGCAGAGATTAAGCTGGCAGCTATAGCGGTGGATAAGAAGTCAGGGAGAGTGATGAAGCTCTTCACAAATGCTCCTGGTTTGCAGTTTTACACTGCTAATTTTGTCAAGAATGACAAGGGAAAAGGAGGGTTTGTTTATCAGCCACGTTCAGCACTTTGTTTGGAGAGTCAAGCATTTCCTGACTCCGTGAATCACCCTAATTTTCCATCAACTATTGTGACCCCAGATAAGCCTTACAAGCATGTCATGTTGCTTAAGTTTTCCACCAAAGTTCCATATGCTTTTTCACAGTTCTAA

Predicted protein sequences of Glyma19g02450

Limit To All Plant Sequences

>Glyma19g02450.1   sequence type=predicted peptide   gene model=Glyma19g02450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKIFVLLCLLFLASSGFVHGSSKKDHIRLFELKKGDFSIKVTNWGATLVSVILPDKNGKLGDIVLGYDSPKAYTNDTSYFGATVGRVANRIGGAQFTLNGIHYKLVANEGNNTLHSGPKAFSDVLWKVTRYIKDDDKPRITFSYHSYDGEGGFPGDLLVTVSYILGKNSLSIIMKAKALNKPTPVNMVNHAYWNLGNHNSGNILDEVVQIFGSQVTLFDDNLIPTGQYASVRGTPNDFLEPHIVGERINQLPKTNGYNINYVLDGEKGNAEIKLAAIAVDKKSGRVMKLFTNAPGLQFYTANFVKNDKGKGGFVYQPRSALCLESQAFPDSVNHPNFPSTIVTPDKPYKHVMLLKFSTKVPYAFSQF*

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