Glyma19g02440 - SoyBase

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Report for Sequence Feature Glyma19g02440

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2182474
stop:	2185528
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15130	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 72 \| chr5:4904426-4906879 FORWARD LENGTH=548	SoyBase	E_val: 4.00E-84	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7KZU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7KZU9_MEDTR	SoyBase	E_val: 7.00E-143	ISS
UniRef100_I1N633	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N633_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma19g02440

Locus	Gene Symbol	Protein Name
	WRKY175	WRKY Transcription Factor

Expression Patterns of Glyma19g02440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g020600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02440

Limit To All Plant Sequences

>Glyma19g02440.1   sequence type=CDS   gene model=Glyma19g02440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCATGTTAAAATTGTCTAGTCTTTGTGGTCAAGAGATAGATGATAAGAGAGATACTTCCATTTGCTCAGAAGAGGACTTGTGTATTGAAAAGGGTAGTAAGGAAGATAAACTTGAATCTGCTAAAGCTGAGATGAGTAAGGTGAAGGAGGAGAATGAAAGATTGAAGATGATGATAGAAAGAGTAGGAAAGAATTACCATTCTCTTCAACTTCGTTTCTTTGACATCCTTCATAGAGAAACTTCAAACAAAGGTGTGGAAGATTCAGCTGTTTCCCTTGATGAAGTGGAGGAACCTAAGCTTGTGTCACTTTGTCTTGGAACAAGTCCATGGGAGCATAAAAAGGATGGAATAATCTGTAACTCTAGCAAACATAAAGAAAATGAAGATTTGGAAGCCAGCCTTACCCTTGGTTTAGACTGCAAAGGTGTGTCTTCAAAGGAACAGGTATCTGATATGAACACCTCAGAAGAAAAGGAAGAAGATTCAACAAATAAATTAGTAAGGACCAAAGATGGAGGTGATGAAATTTCAGAGATAACACCCCCAGCCAAGAGGGCTAGAGTTTGTGTCAGAGCAAGATGTGATAGTCCCGTTATGCATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACACTTGCTCCAGCATGCCCGGTTAGGAAACAGGTGCAAAGATGTGCTGATGACATGTCCATCTTAATCACCACATATGAAGGAACTCACAACCACCCAATTCCAGCTTCAGCCACAGCCATGGCTTCCACCACTTCTGCTGCTGTTTCCATGTTGTTGTCAGGCTCTTCAACATCTCAGCCTACAGATCACAGTTTTGCCTATCATGCAAATTCTCCTACACTGTTCAGTGGTGTCAATTTCAGTCTTTTAGACCAACCAAGAGCAAACCAAGTCTTGTTACCAACCCCTTCCTCACATTTACTCCCAACAATCACTCTAGACCTTACTTCTACTCCATCCTATTCATTAAATCAAGGGAATTGTTTACCATCAAACTTTGCTTCAACCCCAAGATTCCCTCCATTAAGTCTAAACTTTTGGTCCCCAGAGTCCAACATTCCACTATCCTTTTGGGGCAAGGGAATTCCTAACAATGGCACTATTCCTATTGACAAAACTCACATCAAGCCATTCAATATAGGAAACCAATTTCAAGAACATTTCTACCAACATTACTTCAAGAACCAAACTCCATTCAGGGAGGCTTTGGCAGAAACACTAACCAAAGCAATCAGCACAGACACGAGTTTTCGGTCAGCGATAGCTGCTGCAGTTTCATCTATAAGGGGACAAGGATCAAGCAGTGAGAACAAGGGTGATGGAGAGGTTTTAGGTTCAGGATTGAGCTTGAAACTTGGGGAGCATCCTCAACTTGCTTCTTCCAATTCCTTGAACAAGAATGAGTCTGACGCCATCCCGGGC

Predicted protein sequences of Glyma19g02440

Limit To All Plant Sequences

>Glyma19g02440.1   sequence type=predicted peptide   gene model=Glyma19g02440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAMLKLSSLCGQEIDDKRDTSICSEEDLCIEKGSKEDKLESAKAEMSKVKEENERLKMMIERVGKNYHSLQLRFFDILHRETSNKGVEDSAVSLDEVEEPKLVSLCLGTSPWEHKKDGIICNSSKHKENEDLEASLTLGLDCKGVSSKEQVSDMNTSEEKEEDSTNKLVRTKDGGDEISEITPPAKRARVCVRARCDSPVMHDGCQWRKYGQKIAKGNPCPRAYYRCTLAPACPVRKQVQRCADDMSILITTYEGTHNHPIPASATAMASTTSAAVSMLLSGSSTSQPTDHSFAYHANSPTLFSGVNFSLLDQPRANQVLLPTPSSHLLPTITLDLTSTPSYSLNQGNCLPSNFASTPRFPPLSLNFWSPESNIPLSFWGKGIPNNGTIPIDKTHIKPFNIGNQFQEHFYQHYFKNQTPFREALAETLTKAISTDTSFRSAIAAAVSSIRGQGSSSENKGDGEVLGSGLSLKLGEHPQLASSNSLNKNESDAIPG

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