Report for Sequence Feature Glyma19g02420
Feature Type: gene_model
Chromosome: Gm19
Start: 2124384
stop: 2130903
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g02420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
KOG0315
KOG
G-protein beta subunit-like protein (contains WD40 repeats)
JGI ISS
PTHR22844 Panther
F-BOX AND WD40 DOMAIN PROTEIN
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
UniRef100_B9IJU0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9IJU0_POPTR
SoyBase E_val: 7.00E-170 ISS
UniRef100_I1N631 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N631_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g02420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g02420
Paralog Evidence Comments
Glyma13g05220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g02420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g020400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g02420
Coding sequences of Glyma19g02420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g02420.1 sequence type=CDS gene model=Glyma19g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGTCCAAAGAGAACATCAGCACATTTTTTCCACTCGTTATGTTATCATAAAGCAAGAATCTCTTCTGAGGTTGTTTCCCCTTAATGAAATGACTTCAGTATTTCGAGGCGATACGCAAGGGGAGAAAAATGTTTTAGTTACCTCCAGCTGTGATCACTCCATTCGTCTTTGGTGGAAGGGTTCAAGCCTGCGGTGCTTTAGAGGTCACAATGGTCCTGTGTTGTCCCTATCAAATAAATTATTGGGAGAGGATGGCAGAAAAGTATTGGCAAGTGGGGGAGAAGATGGTACTGTTCGACTATGGTCCCTTGGCTCAAGTGGCAAACGAGGACAGCTTGCTTTGAAGGCTACACTCTATGGGCATGAAAAACCTGTAAATTTGATGTCAGTTGCTGGGCACAAAACTTCGCTTTTGGTATCCATCTCAAGAGATTCTAAGGTAAGTGTTTGGGATACTGGCGCTGCTACATCATCTGCTGTTCGTACCTCCTGTTGTGTTGGGATGGCTTCAGTTCCCGGTACACCCGTAAACATGAAATGCCATGAATCACTATTGTATGTGGCTGCTGGTTCCTCTGCCACTGCATTTGATTTAAGGACAATGCAGAAAGTTATCACCGCAGCTGTACATCAACCAAAGCTGTGTTCATTTGATGCCATCCCTTCAAAATATTTAATACGCACAGGCGGTGATGGCAGGGCAATGCTCTGGGATGTTAGGAGAAATCAAGAATCACTAAAACCAGAACCGATAGCCGAGTTGGATGGACATTGTGGCCAAGTAACTTTACTGCACATGGATCCATACAAAATAGTTACTGGGGGCCCTGACAATGCTTATGTGAATGTATGGGAAGTTGACACTGGTGTACAAACAAATTCCTTGCTTTGCTCTTTAACTGATGGTGCTGGATCTGGCTGTGATGCCATGGCTGTAGATGGGTGTAGAATTACTACAACTAGCTATTCTGAAGATTCGGGTGTTTTGTGCTTTAGGGACTACAACCATGATGCCACAAATCCTGTTACGAAACTAGAAAACGAACCGTCATCAAAATTTTGGATTTCTATGTCCGATGATGACAGTGATGACTGA
Predicted protein sequences of Glyma19g02420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g02420.1 sequence type=predicted peptide gene model=Glyma19g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVQREHQHIFSTRYVIIKQESLLRLFPLNEMTSVFRGDTQGEKNVLVTSSCDHSIRLWWKGSSLRCFRGHNGPVLSLSNKLLGEDGRKVLASGGEDGTVRLWSLGSSGKRGQLALKATLYGHEKPVNLMSVAGHKTSLLVSISRDSKVSVWDTGAATSSAVRTSCCVGMASVPGTPVNMKCHESLLYVAAGSSATAFDLRTMQKVITAAVHQPKLCSFDAIPSKYLIRTGGDGRAMLWDVRRNQESLKPEPIAELDGHCGQVTLLHMDPYKIVTGGPDNAYVNVWEVDTGVQTNSLLCSLTDGAGSGCDAMAVDGCRITTTSYSEDSGVLCFRDYNHDATNPVTKLENEPSSKFWISMSDDDSDD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
