Report for Sequence Feature Glyma19g02400
Feature Type: gene_model
Chromosome: Gm19
Start: 2120672
stop: 2123152
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g02400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G28720 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). | chr3:10782276-10784339 FORWARD
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_F4PTY3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ribose-phosphate pyrophosphokinase n=1 Tax=Dictyostelium fasciculatum (strain SH3) (Slime mold) RepID=F4PTY3_DICFS
SoyBase E_val: 2.00E-31 ISS
UniRef100_UPI000233F492 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F492 related cluster n=1 Tax=unknown RepID=UPI000233F492
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g02400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g02400
Paralog Evidence Comments
Glyma13g05180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g02400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g020300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g02400
Coding sequences of Glyma19g02400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g02400.1 sequence type=CDS gene model=Glyma19g02400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCTCCTCCTCCTCCTCCGCCACCACCACCCTCCCGGTGTTGGCGTTCCTCCTTCTCAGCACCGCCATCAGCGCCGCACCGATCATCGGTCTAGACTCATTCCTTACCCACCAATCCCGAATCGATCCTCAGGCCTCGAACGACTCCTTCCTCTCCCTCCCTTCCTCCATCAAAACCCCCCTCTCCCACTCTCTCGACTTCTCCTCCAATTCCCTCCTCTCCCTCTCTCTCCCAATCTCCCTCTCCCTCCACCTCCTCGGCGACTTCCCCTCCGACACCCCCTCCCTCCTCTCCGCCTTCCTCTCCGCCGCCACCACCACCCACCACCCACTTCCACGTCATCACCCCCTTCGACTCCCACCCTCCTCTCCCACACCCTCTCTCTCTCCCACACTCTCCATCTTCTCGTCACCCCCCTCCCAAACCCTAACCTCACTTACCAATTCTCTCTCCCAAACCCTAACCTCACACCTCCACTCCACACCCTCCTCCCTCCGCTCCCCTCTCCTCACCATCCCTCACTCCTCTATTGACCAAATCATCCAAAACCACTTCATCACACAAAACCCTAACCCTAACCCTAACCAAGTCCATCTCTACCTCCTCAACCTCCCTCCCGCTTCCTCTTCCAATTCCAAAGCCTATGCTTACTCATACTCCCCCGGCGATTCTTCCGCTGCTGTGACGAAATGCTCCGGCACTTTCTTCACCTCCTCCCACCGCTACTTCTGGATCGACCTCCGCGCCGGCCCCGTCGACTACGGCCCCGCGATCTCCGGCGACGGAGTCATCCCCCGCGGCGAGTTCCACCCTCTCGCCGCGCTCCACGGCCGTCCGAAGTCCAACAAGGCCTTCGCCGCCGACCTCGCCTCCCTCGTCTGGAGCGCCTACCACGTCTTCCTCGCCCCCTCCCTCCGGATCTCCGTGCCCTTCGAGAAATCGCTCGTGATTCAGTTCATTCATATCCATGGCGGGAATGATAACAAGGATTTGGCCGGTTTAGATTGGAAATCGATCGAGAAGAGCTTCAGGTTCGAGAGTAAGAGCAGTGGATTGCTTTTAGGGGATCAGAGTTTGAGCTTTAGGCAGCACGAGATTAGGTATTCCGAGTGTTCAATTTGCTCGTTCGCAATCTCGCGGTCGATTAATTCGTATACCTCTAGGTTTTTGTTTGATAATTATACTTTGATTGTGAGTGAGTATTTGGATTCGAAGCGATTGCACCAGATTTTGTCTGATTCTGGCGATGAGTTGAGGAAGCTGGCTGGTGTGCTGGAGGAGGACTTTGGCAGGGTTGTTCCTGTGTATGTTTTTGACTTGGATTACACTTCGTTGTTGTTGCTTGATCGGTATCATCAGTCGGTCGCCTTTAAGGACATGGTGATTGCTGTTAGGACGAGGAACACGCAGACCGTGAGTGATTATAGTTGTAATGGTAGGCATGTGTTCACACAGACGAGGGAGCTTGAGCGTCCTATTGTAGGGTCGATTCTTCAGAGTATGTGGGGGGTGTCGCCGACTCATTTGAATTGGAGCCCCCAGCACAATGAGACTTTGGTGGATTATACGTGGAGTATGGGGCAGACACCCTTTGGGCCGTTTTCTGAGATGTTGAGTTTGTCCTTTGTGCAGAAGGATGCTGCCAGGAGGAATGTTCTGTTGACATCGCTGAATTACAGCATAACGAGTGCTATAGATGTTCTTCAGAGTGTTGAGACGCATGGCGGGGCTAAGAATCTGCTCAAGCAGAAGCAGCATGTGGAGTTTGTGCAGAGATGGAACCTTTTTAAGTACAAGCTGAACAAAGCCATGTCTGCGTTGTCTCACTTGGATTTTGAGATGGCTCTGTTTTACTTGCGGTCTTCTGATCATGATCTGTATGCCATTCACTCCATTGTTTATCATGCCTCGCAGGAAATAGAGGCGTCCCTTGTGTGCTTTAGGGACCCTCCGTTTCCCTGGGGTTCGGTCTTGCTTTCTGCATCGGCTTTCCTTTCTGTCTCTTATATTTATGCAAGACGGGACAAACTTTTCAGAAACAAAAGGAAACAATTTTGA
Predicted protein sequences of Glyma19g02400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g02400.1 sequence type=predicted peptide gene model=Glyma19g02400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSSSSSATTTLPVLAFLLLSTAISAAPIIGLDSFLTHQSRIDPQASNDSFLSLPSSIKTPLSHSLDFSSNSLLSLSLPISLSLHLLGDFPSDTPSLLSAFLSAATTTHHPLPRHHPLRLPPSSPTPSLSPTLSIFSSPPSQTLTSLTNSLSQTLTSHLHSTPSSLRSPLLTIPHSSIDQIIQNHFITQNPNPNPNQVHLYLLNLPPASSSNSKAYAYSYSPGDSSAAVTKCSGTFFTSSHRYFWIDLRAGPVDYGPAISGDGVIPRGEFHPLAALHGRPKSNKAFAADLASLVWSAYHVFLAPSLRISVPFEKSLVIQFIHIHGGNDNKDLAGLDWKSIEKSFRFESKSSGLLLGDQSLSFRQHEIRYSECSICSFAISRSINSYTSRFLFDNYTLIVSEYLDSKRLHQILSDSGDELRKLAGVLEEDFGRVVPVYVFDLDYTSLLLLDRYHQSVAFKDMVIAVRTRNTQTVSDYSCNGRHVFTQTRELERPIVGSILQSMWGVSPTHLNWSPQHNETLVDYTWSMGQTPFGPFSEMLSLSFVQKDAARRNVLLTSLNYSITSAIDVLQSVETHGGAKNLLKQKQHVEFVQRWNLFKYKLNKAMSALSHLDFEMALFYLRSSDHDLYAIHSIVYHASQEIEASLVCFRDPPFPWGSVLLSASAFLSVSYIYARRDKLFRNKRKQF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
