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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g02304

Feature Type:gene_model
Chromosome:Gm19
Start:2043161
stop:2046769
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46915AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3754) | chr2:19274018-19277707 REVERSE LENGTH=708 SoyBaseE_val: 3.00E-91ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1M618UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M618_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q014S6UniRef Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 07 n=1 Tax=Ostreococcus tauri RepID=Q014S6_OSTTA SoyBaseE_val: 1.00E-06ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02304 not represented in the dataset

Glyma19g02304 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g019600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02304.2   sequence type=transcript   gene model=Glyma19g02304   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAGAACCACACAATATAGGATACCCACCCGTTTATCAACAAAAAGAAAGAATGTAGAGAGGGAGAGTGGTGAGGTGAGCGTTGTTGTTGAGCAGAAGAGAAGAGAATTGAATCCATTCCAGATGTCATATTGTTGGCAAATACACACTTTGGCGAGCAAGGCTCTTGTTCCAATTCCACAGTCACAGTTTCAGTCATTGTTTTTCCTTATTCACATTCCCATAGCAGTATCCGTCTGGGTCTGAGTCGGAGGGTTCTTTGTTCAGGGCTTCAGGAAATGTCCGTCGTAGAGTCATCCTCACAATACCAGTAGCAGCAGCAGCAGCAGCAGCAGAGCACCACCACCGACTACTATCCCAGTGTCAGAGATGATGAAGAAGGTGAAGGAATTTCTAAAATACATCCCTGTTTCCAAGTCCCAACTCCTAGACGCCATCATCCTCTCTATCCAAGATGATATTGATGCCCATCACTTTCGTCTTCTCACCTCATGCTTAGACTCTATACTTCATGCCGAGCATAAAACTATCTTAGAGGAGATGCGTTCCGATTATCAACTTACAGATTCACTCCAACAACTTGTGTCCAATCCCAATGTCAAGGAGGAAGGGAACCTCTATGACTATCAGCCTGCTTTGGACCTCACCGCTCTTTTACGATCTCTCGACATACCTACCAAGAAAGATTATGATACGGGCTCCAGAGTTACCATTGCTACCCGTTTCCAACGTGCTTTCATGCAGCTTCTTTCAAATGCACAATTTGAAGAACTATCAGCTAGGGACCTGATGTTAACGTCTGCATTGAACACAGACTATCTCCTTACCTTGCCAGTATATGTTGATTGGAAGAGGGCATATGAGTCTAATGCCATAATATTTAGGCGTGGCTATGCAACTGAGAAGCAGAAGGGCCTATTAATTGTTGAAAAACTGGATTACTTACAGTCTAAGTTTCTTCGAAGAACCTTCTTTGCTATATCAGAACCACTAACAAAACTTGGCACCTGGATAAGTGAGCTTTACGAAAATGCCAGTCAGAAACATGAAGTACAAAATTGGACAGAAAGATTGAGGCTTTGGCTAAAGGAATTGTCAGTATTTCAGAAATCACTACTTTATAATGACCCTGCTTCAGATGAGCAAATAGGTGAGGACCAAGTACCAAATGTAGAACTTCCTATTTGGCTGGCAGCTCAAAGGGCAGTAGCTCGATATGAAGGGATTTTGTCACCAGTTGGTCCCCGTTAGGAGATTGCTTTCTTGGATAGGACTTATTCCCCCTATGCCAGAAACACCTTTTGAGGTTCACAATGATAATAACGCTCCTGAACCTTACCTAAGGACCCCTGAAACTCACTCTCAAGTCTCAACAAGTCTTAAATGAACCATGAACAATCAAGATAAGCTGCCACAAAGGAAAGGACCTGTGATTAACCGGGTATGATTTGTTGGTTTGGAGTTTAAATTTCACAAGCCTGAAGTTCTCAGTTTGAAACCTGCAACATCCAAAAAAAACCCGGGTATTCTCATGAGAACATCAAGTAACAAGTCAAAAAGTTATAAAAATTCATTCAGCTCTCCAATTTTTTTAGTGCATAGGTTTCCACTATATTCAGGCAAAAGTAGAATTGTCTTGAACCTAAGGGGTTTGGTTTAAGTGTTTATTTTCTGAAAATAATTTTTGTTTTTAAATTTTCCAGATTTAGAAAACATGTATTGAGAAGAAAGTAGTTTTCACTTCTTCACAAAATGTTGAAAACATTGATGTGTTGTTTTCAGTTTTGGGCATGCTTTTGAAAATATTTTCAGAGAAAATATTTTTTAAATTTTAAACAAATGTATTTCCACTCTTATTTTTTATCTTTTATTTGAAAATGAAAACAGAAAACACTTAAACCAAACGCCAATCAAATCCTAACATCAAATTTGGGTGTCATTATTACAAAATAAAAGAGGAAAAGATAGTGTATATCCTTAATTAATACTCCATTCGGACCAAAACATAAGCAAAATTAACTAACTTTATGTTAATTATGTCTTTTAATTCTTGTAATCATATTTAAAAAGTAATCTTTCC

>Glyma19g02304.1   sequence type=CDS   gene model=Glyma19g02304   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGAAGGTGAAGGAATTTCTAAAATACATCCCTGTTTCCAAGTCCCAACTCCTAGACGCCATCATCCTCTCTATCCAAGATGATATTGATGCCCATCACTTTCGTCTTCTCACCTCATGCTTAGACTCTATACTTCATGCCGAGCATAAAACTATCTTAGAGGAGATGCGTTCCGATTATCAACTTACAGATTCACTCCAACAACTTGTGTCCAATCCCAATGTCAAGGAGGAAGGGAACCTCTATGACTATCAGCCTGCTTTGGACCTCACCGCTCTTTTACGATCTCTCGACATACCTACCAAGAAAGATTATGATACGGGCTCCAGAGTTACCATTGCTACCCGTTTCCAACGTGCTTTCATGCAGCTTCTTTCAAATGCACAATTTGAAGAACTATCAGCTAGGGACCTGATGTTAACGTCTGCATTGAACACAGACTATCTCCTTACCTTGCCAGTATATGTTGATTGGAAGAGGGCATATGAGTCTAATGCCATAATATTTAGGCGTGGCTATGCAACTGAGAAGCAGAAGGGCCTATTAATTGTTGAAAAACTGGATTACTTACAGTCTAAGTTTCTTCGAAGAACCTTCTTTGCTATATCAGAACCACTAACAAAACTTGGCACCTGGATAAGTGAGCTTTACGAAAATGCCAGTCAGAAACATGAAGTACAAAATTGGACAGAAAGATTGAGGCTTTGGCTAAAGGAATTGTCAGTATTTCAGAAATCACTACTTTATAATGACCCTGCTTCAGATGAGCAAATAGGTGAGGACCAAGTACCAAATGTAGAACTTCCTATTTGGCTGGCAGCTCAAAGGGCAGTAGCTCGATATGAAGGGATTTTGTCACCAGTTGGTCCCCGTTAG

>Glyma19g02304.2   sequence type=CDS   gene model=Glyma19g02304   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGAAGGTGAAGGAATTTCTAAAATACATCCCTGTTTCCAAGTCCCAACTCCTAGACGCCATCATCCTCTCTATCCAAGATGATATTGATGCCCATCACTTTCGTCTTCTCACCTCATGCTTAGACTCTATACTTCATGCCGAGCATAAAACTATCTTAGAGGAGATGCGTTCCGATTATCAACTTACAGATTCACTCCAACAACTTGTGTCCAATCCCAATGTCAAGGAGGAAGGGAACCTCTATGACTATCAGCCTGCTTTGGACCTCACCGCTCTTTTACGATCTCTCGACATACCTACCAAGAAAGATTATGATACGGGCTCCAGAGTTACCATTGCTACCCGTTTCCAACGTGCTTTCATGCAGCTTCTTTCAAATGCACAATTTGAAGAACTATCAGCTAGGGACCTGATGTTAACGTCTGCATTGAACACAGACTATCTCCTTACCTTGCCAGTATATGTTGATTGGAAGAGGGCATATGAGTCTAATGCCATAATATTTAGGCGTGGCTATGCAACTGAGAAGCAGAAGGGCCTATTAATTGTTGAAAAACTGGATTACTTACAGTCTAAGTTTCTTCGAAGAACCTTCTTTGCTATATCAGAACCACTAACAAAACTTGGCACCTGGATAAGTGAGCTTTACGAAAATGCCAGTCAGAAACATGAAGTACAAAATTGGACAGAAAGATTGAGGCTTTGGCTAAAGGAATTGTCAGTATTTCAGAAATCACTACTTTATAATGACCCTGCTTCAGATGAGCAAATAGGTGAGGACCAAGTACCAAATGTAGAACTTCCTATTTGGCTGGCAGCTCAAAGGGCAGTAGCTCGATATGAAGGGATTTTGTCACCAGTTGGTCCCCGTTAG

>Glyma19g02304.1   sequence type=predicted peptide   gene model=Glyma19g02304   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKKVKEFLKYIPVSKSQLLDAIILSIQDDIDAHHFRLLTSCLDSILHAEHKTILEEMRSDYQLTDSLQQLVSNPNVKEEGNLYDYQPALDLTALLRSLDIPTKKDYDTGSRVTIATRFQRAFMQLLSNAQFEELSARDLMLTSALNTDYLLTLPVYVDWKRAYESNAIIFRRGYATEKQKGLLIVEKLDYLQSKFLRRTFFAISEPLTKLGTWISELYENASQKHEVQNWTERLRLWLKELSVFQKSLLYNDPASDEQIGEDQVPNVELPIWLAAQRAVARYEGILSPVGPR*

>Glyma19g02304.2   sequence type=predicted peptide   gene model=Glyma19g02304   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKKVKEFLKYIPVSKSQLLDAIILSIQDDIDAHHFRLLTSCLDSILHAEHKTILEEMRSDYQLTDSLQQLVSNPNVKEEGNLYDYQPALDLTALLRSLDIPTKKDYDTGSRVTIATRFQRAFMQLLSNAQFEELSARDLMLTSALNTDYLLTLPVYVDWKRAYESNAIIFRRGYATEKQKGLLIVEKLDYLQSKFLRRTFFAISEPLTKLGTWISELYENASQKHEVQNWTERLRLWLKELSVFQKSLLYNDPASDEQIGEDQVPNVELPIWLAAQRAVARYEGILSPVGPR*







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