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Report for Sequence Feature Glyma19g02250

Feature Type:gene_model
Chromosome:Gm19
Start:1957964
stop:1965329
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g02250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39940AT Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein | chr5:15987649-15990561 FORWARD LENGTH=480 SoyBaseE_val: 0ISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
PF03486PFAM HI0933-like protein JGI ISS
UniRef100_B9RUK8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase, putative n=1 Tax=Ricinus communis RepID=B9RUK8_RICCO SoyBaseE_val: 0ISS
UniRef100_C6TL13UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TL13_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g02250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g019000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g02250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g02250
>Glyma19g02250.1   sequence type=CDS   gene model=Glyma19g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTATTGCAGGCGTGTTTCAGACTCTGCAATATGTTATGGTAAGACAGTGCATCTCAGGTTTTGGACAACCAAACCACTCTGTTCTCTGTCTTGGGTTTTCCTCACTACTTCCTACCATTCACTACAAACATATGAACCTTTTCTTCACCCCCAGGGCAAGGAGGTGCACTACCCTTGCCATTTCCCCAGCCACAAAGTCAAAGGAGGAGCTGTTAGTGGTTGTTGGGGGTGGAGCAGCAGGGGTGTATGGAGCCATTCATGCCAAGACTGTAGCACCCCATCTTAGTGTGGTGGTTATTGAGAAGGGAAAGCCTCTCTCCAAGGTGAAAGTTTCTGGAGGAGGACGGTGCAATGTGACTAATGGACATTGTGTTGACAATATGATTTTGGCAGAAAACTATCCGAGGGGTCACAAGGAACTGAGAGGATCTTTCTTTAATACGCATGGCCCAGTGGATACAATGTCTTGGTTTGTCTCTCAAGGGGTGGAACTAAAGGTTGAGGATGATGGCAGGGTATTTCCAGTCAGCAATAGTTCTTCTTCTATAATTGATTGCCTCATGTCTGAAGTGAAGGAAAGGGGAGTTTCTGTGCAGACCAGAAAAACTGTAACAGCTGTATCTATTTTATCTAGTGGCAAATTCCTTCTTGAGGTTCAGCAGCATACATCTGTTCATGCTGAGCATGTCGAAGCTGATTATCTATTGATTGCTAGTGGTAGTAGCCGTCAGGGTTATACTCTTGCATCTCAGCTTGGTCATTCAGTTGTAGATCCAGTGCCGAGCTTGTTTACTTTCAAAATAGAAGATTTGCGTTTGCGAGAGTTGTCTGGGGTTACATTCCCCAAAGTTAAAGTGAGGCTAAAATTGGATAGTGTCCAAAGGAATATACCTCAGCTTACTCAGGTTGGTCCCATGTTAGTTACACATTGGGGGCTTAGTGGGCCGGTTGTTCTTCGATTATCTGCTTGGGGTGCTCGTTTTCTGTTCAGTTCAGGTTACAAAGGCAAACTTTTTGTGGATTTTATCCCTGATCTGCACGTGGAAAGTTTGAAGTCAGTTCTTTCTCATCACAAGCTTCAATATGCGAAACAAAAGGTACTCAATTCCTGTCCTCCCGAATTTGGCATAACAAAAAGATTTTGGAGCTATGTGTTGGAACGACAGGGTTTAAGTGGAGATATTCTGTGGGCTTCCATTTCAAATAGTTCATTGATGTCCATTGGTTCTTTATTAAAGGACTGTGTATTTGAAGTTACAGGCAAGGGTCAATTTAAGGATGAATTTGTTACTGCTGGTGGTGTGCCCTTATCAGAGATTATGCTTAATACAATGGAAAGCAAAATTTGCTCACGCCTGTTCTTTGCTGGAGAGATACTGAATGTTGATGGGGTAACTGGTGGTTTCAATTTCCAGAATGCTTGGTCGGGAGGATTTATTGCAGGAACCACTATTGGTGGATTAGCACTTGGTTCTTATCTGGGTTCAAAGTAA
Predicted protein sequences of Glyma19g02250
>Glyma19g02250.1   sequence type=predicted peptide   gene model=Glyma19g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIAGVFQTLQYVMVRQCISGFGQPNHSVLCLGFSSLLPTIHYKHMNLFFTPRARRCTTLAISPATKSKEELLVVVGGGAAGVYGAIHAKTVAPHLSVVVIEKGKPLSKVKVSGGGRCNVTNGHCVDNMILAENYPRGHKELRGSFFNTHGPVDTMSWFVSQGVELKVEDDGRVFPVSNSSSSIIDCLMSEVKERGVSVQTRKTVTAVSILSSGKFLLEVQQHTSVHAEHVEADYLLIASGSSRQGYTLASQLGHSVVDPVPSLFTFKIEDLRLRELSGVTFPKVKVRLKLDSVQRNIPQLTQVGPMLVTHWGLSGPVVLRLSAWGARFLFSSGYKGKLFVDFIPDLHVESLKSVLSHHKLQYAKQKVLNSCPPEFGITKRFWSYVLERQGLSGDILWASISNSSLMSIGSLLKDCVFEVTGKGQFKDEFVTAGGVPLSEIMLNTMESKICSRLFFAGEILNVDGVTGGFNFQNAWSGGFIAGTTIGGLALGSYLGSK*






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