Report for Sequence Feature Glyma19g02230
Feature Type: gene_model
Chromosome: Gm19
Start: 1944053
stop: 1947149
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g02230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G28630 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF569) | chr3:10729065-10730564 FORWARD LENGTH=335
SoyBase E_val: 2.00E-109 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF04601 PFAM
Protein of unknown function (DUF569)
JGI ISS
UniRef100_Q9LJJ2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD39313.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LJJ2_ARATH
SoyBase E_val: 4.00E-102 ISS
UniRef100_UPI000233F48D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F48D related cluster n=1 Tax=unknown RepID=UPI000233F48D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g02230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g02230
Paralog Evidence Comments
Glyma13g05032 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g02230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g018900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g02230
Coding sequences of Glyma19g02230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g02230.1 sequence type=CDS gene model=Glyma19g02230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTCTTTCAAAAGGCTAAAGTGGTGCGCTTGAGAAGCCACCATGATAAATACATGTTGGCTGATGGTGATCAAGAAAATGTCTTCCAAGACCGCAATGGGTGCTACATGAATGCTAAATGGATTGTGGATGTTGTGGAGAATTCCAATTTTATAAGGCTGAAGAGTTGTTATGGAAAATACTTAACAGCCTCAAACATGCCATTCATATTGAGAGGCACAGGAAAAAAAGTGTTGCAAACATTGCCTACTAGGTTAAATTCTTCAATTGAATGGGAACCTATTAGAGAGGGGGTTCAGGTGAGGCTAAGAACACGCTATGGCCAATATTTACGTGGTAATGGAGGGTTGCCACCTTGGAGGAACACCATCACCCATGATGTTCCACACAGAACAGCAACAGCTAATTGGATTTTATGGGATGTGGATATTGTGGAGCTTCGTCCACAAACACAAGCTCCTAAACCAAGACCAAGGCCTACACCTATTACCCCACCTAATCATTCTATGAATGCAACCCCAACAAATCTTTCACCTTGTCCTTCTCCTTCATCATCACCATTAATTTCGGAGATGGATTCCTTGGTCAAGATTGATCTCAGGTCTCCCACAACATCTGAGTCCGAAGATGAAATAGAATGCTTGTCACCATTGAAAGAAGGAAGAATTATATTTTATGATGTGGGTAATGATAATGGTGATATTGATGATGCAAAAAAAGAGTCATTCTTTACCTTTAAAGGAAGTTGTGCGAGTGAGTTAAAGGATAAATTGAAAGAGGAAACAGGACTTGATGATATTATTGTATGTTGCCGCAATCCGTTGACTACAAAACTTTATCCACTTCACTTACAACTACCTCCTAATAGCATTGACATGCATGTAGTTGTGGTTCCTTCTTCATTCAAACTCCAATGA
Predicted protein sequences of Glyma19g02230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g02230.1 sequence type=predicted peptide gene model=Glyma19g02230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFFQKAKVVRLRSHHDKYMLADGDQENVFQDRNGCYMNAKWIVDVVENSNFIRLKSCYGKYLTASNMPFILRGTGKKVLQTLPTRLNSSIEWEPIREGVQVRLRTRYGQYLRGNGGLPPWRNTITHDVPHRTATANWILWDVDIVELRPQTQAPKPRPRPTPITPPNHSMNATPTNLSPCPSPSSSPLISEMDSLVKIDLRSPTTSESEDEIECLSPLKEGRIIFYDVGNDNGDIDDAKKESFFTFKGSCASELKDKLKEETGLDDIIVCCRNPLTTKLYPLHLQLPPNSIDMHVVVVPSSFKLQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
