Glyma19g02200 - SoyBase

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Report for Sequence Feature Glyma19g02200

Feature Type:	gene_model
Chromosome:	Gm19
Start:	1890620
stop:	1892909
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10490	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) \| chr1:3453589-3459925 FORWARD LENGTH=1028	SoyBase	E_val: 3.00E-53	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR10925	Panther	N-ACETYLTRANSFERASE-RELATED	JGI		ISS
UniRef100_G7LBB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase-like protein n=1 Tax=Medicago truncatula RepID=G7LBB9_MEDTR	SoyBase	E_val: 5.00E-70	ISS
UniRef100_I1K4S2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K4S2_SOYBN	SoyBase	E_val: 3.00E-87	ISS

Expression Patterns of Glyma19g02200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g02200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02200

Limit To All Plant Sequences

>Glyma19g02200.1   sequence type=CDS   gene model=Glyma19g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGTTTATAGAAGGAAAATAACTATTCCAGGCCAAGAGCCCTCCAAAAAAGTCTTCATATCTCTATTCAGAGGGATTTTTTGGAATCAACGCATAGCATCCACTACAGACACTATTCAACCCGCTATTTGGTCCACTATGGACACTACACTAAACTGCTCCATTACAGCAGCCCTTGTAGCGGGCAGGGAACAAACCTCAAATGGATTCTCCTTTGGGCTAACTTTGGACCTTTTACGCTTTTGGAGGAAACATAAATTTGCTCCTTTCTACATTGGCCAGATTCCAAATACTATGACTGGTGAGCATACATGCATGATCCTGAAACCCCTACACAATGATGAAATTGAAGCTGATGGATCAAATCAGTTGGGCTTTTTTAGTCCATTTTACCAAGATTTTAGACAACGATTTGCTAAACTTCTTGCTTCCACTTTTCGTGGCATGGAATACGAGCTTGCTTTGAGCATAATAGATCCCAAAATCAATTTCAAGTGCCAAGACCCTACGGAGACCTCGTCTGATAAATGTCTGCAGTCGGTCAGAGGTTATTTATCCCCACATGATATGAAGCGATTAGAGGCATATGTTGACAACCTGGCTGACTTTCATCGGGTAAGACCTCGTCTGATATGTCTATATCTGCATATAGTACTCAATTATGTATTGATTTTACATTGGGGGAATTCTCATAATTGGAAACCATTATTAGCATCAACAAATCCTGAGATTACTTGGATTATTGATAGCTAA

Predicted protein sequences of Glyma19g02200

Limit To All Plant Sequences

>Glyma19g02200.1   sequence type=predicted peptide   gene model=Glyma19g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QVYRRKITIPGQEPSKKVFISLFRGIFWNQRIASTTDTIQPAIWSTMDTTLNCSITAALVAGREQTSNGFSFGLTLDLLRFWRKHKFAPFYIGQIPNTMTGEHTCMILKPLHNDEIEADGSNQLGFFSPFYQDFRQRFAKLLASTFRGMEYELALSIIDPKINFKCQDPTETSSDKCLQSVRGYLSPHDMKRLEAYVDNLADFHRVRPRLICLYLHIVLNYVLILHWGNSHNWKPLLASTNPEITWIIDS*

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