Glyma19g02150 - SoyBase

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Report for Sequence Feature Glyma19g02150

Feature Type:	gene_model
Chromosome:	Gm19
Start:	1864175
stop:	1867173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36220	AT	Annotation by Michelle Graham. TAIR10: ferulic acid 5-hydroxylase 1 \| chr4:17137584-17139619 REVERSE LENGTH=520	SoyBase	E_val: 0	ISS
GO:0009699	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0004497	GO-mf	Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0046424	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferulate 5-hydroxylase activity	SoyBase	N/A	ISS
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI		ISS
PTHR24298	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24298:SF44	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_G3E7M3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coniferylaldehyde 5-hydroxylase n=1 Tax=Glycine max RepID=G3E7M3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N611	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N611_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g02150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g02150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02150

Limit To All Plant Sequences

>Glyma19g02150.1   sequence type=CDS   gene model=Glyma19g02150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACCTCGACCTCGACCCATTCCAGACAAGCATCTTAATCCTCGTCCCAATAGCACTCCTGGTGGCGTTACTATCTCGTACTCGTCGAAGAGCACCCTACCCACCAGGCCCAAAGGGTTTACCAATCATAGGAAACATGTTAATGATGGAGCAGCTAACCCACCGCGGCCTCGCCAACCTGGCCAAACACTACGGCGGCATCTTCCACCTCCGCATGGGGTTCCTCCACATGGTCGCCATCTCCGACCCCGTCGCCGCGCGTCAGGTTCTCCAAGTCCAAGACAACATCTTCTCCAACCGCCCAGCCACCATCGCCATCAGCTACCTTACCTACGACCGCGCCGACATGGCTTTTGCCCACTACGGCCCCTTCTGGCGCCAGATGCGGAAACTCTGCGTCATGAAGCTCTTCAGCCGCAAGCGCGCCGAGTCCTGGCAGTCAGTCCGCGATGAGGTCGACGCCGCCGTTCGCGCCGTCGCTAGCAGCGTCGGAAAGCCCGTCAACATTGGAGAATTAGTGTTTAACCTCACCAAGAACATCATCTACCGCGCCGCGTTCGGGTCGAGTTCCCAAGAAGGCCAGGACGAGTTGAACTCGAGACTCGCTAGGGCACGTGGCGCGCTCGATAGCTTCAGTGATAAGATCATCGACGAGCACGTGCATAAGATGAAGAATGATAAGAGCAGTGAAATTGTTGATGGAGAAACGGACATGGTGGATGAGTTGCTGGCGTTCTACAGCGAGGAGGCGAAGTTGAACAATGAATCGGACGATTTGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATGGACGTGATGTTCGGAGGCACGGAAACGGTAGCGTCAGCGATCGAGTGGGCCATGGCGGAGCTCATGAGAAGCCCAGAAGATCAAAAGCGGGTCCAACAAGAGCTGGCGGATGTAGTGGGCCTGGACCGTCGGGCCGAAGAGTCCGATTTCGAGAAACTCACTTATCTCAAATGTGCCCTCAAAGAGACCCTCCGCCTCCACCCTCCGATCCCGCTCCTCCTCCACGAGACGGCGGAGGACGCGACGGTCGGCGGTTACCTCGTCCCCAAGAAGGCGCGTGTCATGATCAACGCGTGGGCCATTGGGAGGGACAAGAACAGCTGGGAGGAACCCGAGAGCTTCAAGCCCGCCCGGTTTCTTAAACCGGGCGTGCCCGATTTCAAAGGGAGCAACTTCGAGTTCATTCCATTCGGGTCGGGTCGCAGGTCCTGCCCCGGGATGGTGTTGGGGCTCTACGCGCTCGAGTTGACGGTGGCGCACCTCCTTCACTGCTTCACGTGGGAATTGCCAGATGGGATGAAGCCAAGTGAGATGGACATGGGTGACGTGTTCGGACTCACCGCTCCAAGATCCACGCGACTCATTGCTGTGCCAACCAAGCGCGTGGTGTGCCCTCTCTTTTAA

Predicted protein sequences of Glyma19g02150

Limit To All Plant Sequences

>Glyma19g02150.1   sequence type=predicted peptide   gene model=Glyma19g02150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANLDLDPFQTSILILVPIALLVALLSRTRRRAPYPPGPKGLPIIGNMLMMEQLTHRGLANLAKHYGGIFHLRMGFLHMVAISDPVAARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRDEVDAAVRAVASSVGKPVNIGELVFNLTKNIIYRAAFGSSSQEGQDELNSRLARARGALDSFSDKIIDEHVHKMKNDKSSEIVDGETDMVDELLAFYSEEAKLNNESDDLQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEDQKRVQQELADVVGLDRRAEESDFEKLTYLKCALKETLRLHPPIPLLLHETAEDATVGGYLVPKKARVMINAWAIGRDKNSWEEPESFKPARFLKPGVPDFKGSNFEFIPFGSGRRSCPGMVLGLYALELTVAHLLHCFTWELPDGMKPSEMDMGDVFGLTAPRSTRLIAVPTKRVVCPLF*

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