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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g02140

Feature Type:gene_model
Chromosome:Gm19
Start:1854492
stop:1856772
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64260AT Annotation by Michelle Graham. TAIR10: MuDR family transposase | chr1:23847756-23849915 FORWARD LENGTH=719 SoyBaseE_val: 4.00E-24ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR11668Panther SERINE/THREONINE PROTEIN PHOSPHATASE JGI ISS
PTHR11668:SF2Panther SERINE/THREONINE PROTEIN PHOSPHATASE-RELATED JGI ISS
PF03108PFAM MuDR family transposase JGI ISS
UniRef100_Q7XU62UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSJNBb0091E11.13 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XU62_ORYSJ SoyBaseE_val: 3.00E-45ISS
UniRef100_UPI0002336B66UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336B66 related cluster n=1 Tax=unknown RepID=UPI0002336B66 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02140 not represented in the dataset

Glyma19g02140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02140.1   sequence type=CDS   gene model=Glyma19g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATTTTACTGAGGATGAGGATCAACAGTTCTTTGATCACATCAATCAGCAAAGCGATGACCAAAGTGATGACCAAACCGATGACGAGGGTGTTAGCAGACCAACGACACCTCCATCACCTCCGTTGCAATATCAGCAACCTAGGTGTCCAGTAGACTTGAACTTTGACCACCTACCACACTATATTGATCGACCCCATTTTGTTCATCAGCAACACAATGTACAACCACAAGTCGGTGTACTCGAGGTTGGCATGACCTTCGATGACAAATCACAATGTATTCGAGCAATCAAAGAATACAACATCAGAAATCATTTTGATTGCAGAACAATTTACTCTGACCAAAGAAGGCTACACTTCGTCTGCAAGTTACATGAAAATGGTTGTACATGGAGCTTGGGCGCATGCAATTCAAAGAGGCATAACAAATGGATTATCAAGAGTATCATAGGTCATCACACTTGTCTCGTGCCGATGCTCAGACAAGATCATCGACAACTCGACAAACACGTCATAGCACAGATCATCCAACCAATTGTCAAAACAAACCCAACTGTCTCTATCAAGACATTGATTGCAGAGATCAAAACATTCATGAATTATACCCCATCCTACAAGAAGACATGGTTAGCAAAGCAAAAAGCATTGGAGATGATTCATGGAAACTGGGAAGAATCATATGTCAAACTGTCAAAACTTTTTGGAGCTTTGCAATCTTGTGTTCCCGGGACTGTGGTCGCTGCTCAAACAGAATCCTTGTATGAGGGGGGAGAAATAGTACCGGACAAAAAATTGTTTAAACGTGTCTTTTGGTCATTTGGTCCATGCATTAATGGTTTTGCATATTGCAAACCCATTGTACAAGTAGATGGTACATGGCTTTACGGAAAGTATACTGGCACACTGTTGATTGCTACCGTACAAGATGGAGCTAACCATATATTCCCGATTGCCTATGCCATTGTAGAAGGGGAGACAACTTCAGCTTGGGGGACACATCCCATTTCTTTTGCCTGCGCCACATTGCACAAAACTTTCTTCGTGATGCACTGGCGACATCTTGGGGATATCCGTGCGAATAAGCCAAGTGCAGCTGAATGGCTTGATCAATTACCCAAACAAAAATGGGTACAATGCTTTGATGAGGGGAAACGTTGGGGACTGACTACCAATTTGTCGGAGTCTGTTAATTCCATGTTCAAAAACACAAGACATTTGTCGGTGTCATCATTGGTTGAGGAGACCTATTTCAAGACTGCACAACTCTTTGCTAATAGAGGTCGACAAACTCAGGCAATGATCAACTCCGGCTCACAGTATTCTGAAGTCGTCTTCGATGCAATCAATAGTGGTCAACAAGAATCTAATACACACATTGTAAATGAATTCGACAGACACAATCACACTTTTATTATAACCGAGACTCAATTCCCACTTGAAACACCCAGACCACCTGGAAGGAGATCAGTGGGGTCTGATCCAAGGAGGAAGAGGACTGCAAAGGGTCGTCCCGTTTCAACTCGCATTCCTACTGAGATGGACGAAGACAAAAATGAACGAGCAAGTAGAAAAAAATGTGGACTTTGCTGGCAACATGGTCATAGCAGAAATAATTGTCCTAATGCATCCTCATCTTAG

>Glyma19g02140.1   sequence type=predicted peptide   gene model=Glyma19g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDFTEDEDQQFFDHINQQSDDQSDDQTDDEGVSRPTTPPSPPLQYQQPRCPVDLNFDHLPHYIDRPHFVHQQHNVQPQVGVLEVGMTFDDKSQCIRAIKEYNIRNHFDCRTIYSDQRRLHFVCKLHENGCTWSLGACNSKRHNKWIIKSIIGHHTCLVPMLRQDHRQLDKHVIAQIIQPIVKTNPTVSIKTLIAEIKTFMNYTPSYKKTWLAKQKALEMIHGNWEESYVKLSKLFGALQSCVPGTVVAAQTESLYEGGEIVPDKKLFKRVFWSFGPCINGFAYCKPIVQVDGTWLYGKYTGTLLIATVQDGANHIFPIAYAIVEGETTSAWGTHPISFACATLHKTFFVMHWRHLGDIRANKPSAAEWLDQLPKQKWVQCFDEGKRWGLTTNLSESVNSMFKNTRHLSVSSLVEETYFKTAQLFANRGRQTQAMINSGSQYSEVVFDAINSGQQESNTHIVNEFDRHNHTFIITETQFPLETPRPPGRRSVGSDPRRKRTAKGRPVSTRIPTEMDEDKNERASRKKCGLCWQHGHSRNNCPNASSS*







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