SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G28480 | AT | Annotation by Michelle Graham. TAIR10: Oxoglutarate/iron-dependent oxygenase | chr3:10676266-10678262 REVERSE LENGTH=316 | SoyBase | E_val: 8.00E-153 | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0018401 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0016706 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | SoyBase | N/A | ISS |
| GO:0031418 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-ascorbic acid binding | SoyBase | N/A | ISS |
| KOG1591 | KOG | Prolyl 4-hydroxylase alpha subunit | JGI | ISS | |
| PTHR10869 | Panther | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT | JGI | ISS | |
| PF01549 | PFAM | ShK domain-like | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_B7FKS2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Prolyl 4-hydroxylase subunit alpha-2 n=1 Tax=Medicago truncatula RepID=B7FKS2_MEDTR | SoyBase | E_val: 7.00E-178 | ISS |
| UniRef100_I1N610 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N610_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g02110 not represented in the dataset |
Glyma19g02110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g04940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g018100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g02110.1 sequence type=CDS gene model=Glyma19g02110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCTCGCCATTTGGCTTCTTCGCTCTTCCTCTGTTTCCTCTGTTTCGAGATCTCTGTTTCGTCCCTTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACGCATGGATCGGTGCTAAGGTTGAACAGAGGTGGCTCTTCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGAGTCCCAGGGCTTTTCTGTACAAGGGGTTTTTATCCGAGGAAGAATGTGATCATTTGATAGTTCTGGCCAAGGACAAGCTGGAGAAGTCTATGGTGGCAGATAATGATTCCGGTAAAAGCATAATGAGTGATATCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGGATGAAATAGTTGCTGGTATTGAAGCCCGAATTGCCGCATGGACATTCCTTCCTGTAGAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATGAACCACATTTTGATTACTTCCATGACAAAGCTAATCAAGTTATGGGTGGCCATCGGATTGCCACTGTATTGATGTATTTGTCTGATGTTGAGAAGGGTGGGGAAACAATTTTTCCCAATGCCGAGGCAAAGTTGTTGCAGCCAAAAGATGAGAGCTGGTCTGAATGTGCTCACAAAGGATATGCAGTAAAGCCTCAGAAGGGTGATGCCTTGTTGTTCTTCAGTCTCCATCTGGATGCAAGTACAGATACTAAGAGCTTGCATGGAAGCTGTCCAGTCATTGAGGGCGAGAAGTGGTCTGCAACCAAGTGGATTCACGTGAGTGACTTTGAAAAACCATTCAAGCAAGTGGATAATGGAGAGTGTGTTGATGAGAATGAGAATTGCCCTAGGTGGGCTAAAGTAGGTGAATGTGACAAGAATCCACTTTATATGGTTGGTGGGGAAGGAGTAAGAGGAAGCTGTATGAAGAGTTGCAATGTCTGCACTTCTTAA
>Glyma19g02110.1 sequence type=predicted peptide gene model=Glyma19g02110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSRHLASSLFLCFLCFEISVSSLRLPGLDQDAKATHGSVLRLNRGGSSVKFDPTRVTQLSWSPRAFLYKGFLSEEECDHLIVLAKDKLEKSMVADNDSGKSIMSDIRTSSGMFLNKAQDEIVAGIEARIAAWTFLPVENGESMQILHYENGQKYEPHFDYFHDKANQVMGGHRIATVLMYLSDVEKGGETIFPNAEAKLLQPKDESWSECAHKGYAVKPQKGDALLFFSLHLDASTDTKSLHGSCPVIEGEKWSATKWIHVSDFEKPFKQVDNGECVDENENCPRWAKVGECDKNPLYMVGGEGVRGSCMKSCNVCTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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