Glyma19g02100 - SoyBase

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Report for Sequence Feature Glyma19g02100

Feature Type:	gene_model
Chromosome:	Gm19
Start:	1808450
stop:	1809991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g02100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76120	AT	Annotation by Michelle Graham. TAIR10: Pseudouridine synthase family protein \| chr1:28559224-28560294 REVERSE LENGTH=356	SoyBase	E_val: 5.00E-96	ISS
GO:0001522	GO-bp	Annotation by Michelle Graham. GO Biological Process: pseudouridine synthesis	SoyBase	N/A	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0009982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pseudouridine synthase activity	SoyBase	N/A	ISS
PTHR11142	Panther	PSEUDOURIDYLATE SYNTHASE	JGI		ISS
PF01416	PFAM	tRNA pseudouridine synthase	JGI		ISS
UniRef100_I1N609	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pseudouridine synthase n=1 Tax=Glycine max RepID=I1N609_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F48A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F48A related cluster n=1 Tax=unknown RepID=UPI000233F48A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g02100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g02100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g018000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g02100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g02100

Limit To All Plant Sequences

>Glyma19g02100.2   sequence type=CDS   gene model=Glyma19g02100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACTCAGATACGAAGCTGACAACTTCATCCCTGCCTCCACCACCTCCAGTATCTGCGGAGGAGCCAGAGCCCAAGAAGTTGAAGATGTCCACCACAACTTCTGATGATGAAGAATGTGCAGCTGGCACAGGCACCAAGAAAAGATACAAGCGCCGTAAGGTTGCTATTTTCTTTGCTTACTGTGGTGTTGGTTATCAGGGTATGCAGAAAAACCCTGGTGCAAAGACTATTGAAGGTGACCTAGAAGAAGTCTTGTATGTGTCTGGAGCTGTCCCTGAACAGGATCGTGGAGTCCCTAAACGATATGACTGGGCTCGCTCAGCTAGAACTGATAAAGGAGTTAGTGCTGTTGGTCAGGTTGTCTCAGGCCGGTTCTATATTGATCCACCTGGCCTTGTTGACCGCCTTAATTCAAACCTTCCTTCTCAGATAAGGATCTTTGGTTACAAACGTGTGACAGCTTCTTTTAATGCCAAGAAGTTTTGCGACCGGAGGAGGTATGTCTACCTCATTCCTGTGTTTGCTCTTGATCCTAGCTGTCATCGTGATAGAGAGACCGTCATGGCTAGTTTGGGATCTGGAAATGAGCTTGTTAAGTGTTTGGAGTGTTCTGAGAGGGGCCGAAAGGTGATAGGATTAGTTGGTAATCGTAAGAAGAATCTGGAACTAGAAGCTGTGGATGTCGAGGCTGGTATTTCATCAAACAGAGACTCTGGAGTTACAGAGGATGTGGAGGTTTCTTTGAGCAAAGGTGATGATAATCATTTAAATGAGGAATATGGGAATGATAATAAGGAGGGTACTCCTTTTAATGGTGAATCTGTGAATAATTCAGACATTCTTGAGGATGAAAAAGTTGGATTATATTTGGATGAGTGCTTCTTTACTTCATATAACCAGAAGTGGAAAGATCATGAAGAGTTGTCCATGAAAGCATATGAAAAAGATGCTGAGGAGTTCAAAATGAAGTACATATACTCTCATATTGCTTCCACAGAACAGAAGGAAGGAACTGTCGCTCTTTGGTTGCATTCTTTGAACCATAGAAATTATCCAGATCTGCATGTTATCAATGAGGAAGCCATCCCCGATAACAAGAGTGCTGATCCCAAAGAAGCCATCACTGATAACAAGAGTGCTGATCCCAAAGATGCCATCACCGATAACAAGGGTGCTGATCTCGAAGAACACATCACCGATAACAATCCTGTAGTTGTGACTCAGTGA

Predicted protein sequences of Glyma19g02100

Limit To All Plant Sequences

>Glyma19g02100.2   sequence type=predicted peptide   gene model=Glyma19g02100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSDTKLTTSSLPPPPPVSAEEPEPKKLKMSTTTSDDEECAAGTGTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEVLYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVIGLVGNRKKNLELEAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEEYGNDNKEGTPFNGESVNNSDILEDEKVGLYLDECFFTSYNQKWKDHEELSMKAYEKDAEEFKMKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLHVINEEAIPDNKSADPKEAITDNKSADPKDAITDNKGADLEEHITDNNPVVVTQ*

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