Report for Sequence Feature Glyma19g02080
Feature Type: gene_model
Chromosome: Gm19
Start: 1794245
stop: 1798904
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g02080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G59650 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1336) | chr1:21920099-21922670 FORWARD LENGTH=492
SoyBase E_val: 7.00E-156 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF07059 PFAM
Protein of unknown function (DUF1336)
JGI ISS
UniRef100_I1N607 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N607_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SLT5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CW14 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SLT5_ARATH
SoyBase E_val: 3.00E-153 ISS
Expression Patterns of Glyma19g02080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g02080
Paralog Evidence Comments
Glyma13g04910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g02080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g017700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g02080
Coding sequences of Glyma19g02080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g02080.1 sequence type=CDS gene model=Glyma19g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGTTTGTGGGTCGAGGCCCAAAGTGAACGAAGAAGACCTCTCATCAAAGAAGAAGAACAACAACAACAACAATCATCGAAGAAGAAGAAGGAGAATCCTCAGAAGACGCGTATCTTCTAGAAAGATCGAAGCCAACAACGTTTCTCACTCTAATTCAGCTCTTCAAGCTTCTAATCGCGCTTCTGATGCTGCTTGGTTTGATTCTACTTCGGCGTTGGATTCTGAGTGTGATGACGAATTTTACAGTGTCTATGATGGAGAAGTGTCTACAGGTCATGCAGATGAAATTGGAGAGGACAGAAAGCTGTCCCTTGACCATTGTGGGATTCTGCCAAATAACTGTTTGCCTTGCCTCACTTCCAATGCAATTGCTGTTGAAAAAAGAAGGCCAATGAGTCCTGATACACCAAGTTCACGGAGAAAGTCACTTTCTAAACTCTCCTTCAAATGGAGAGAAGGGTCTTCAGATATGACTTTACTTTCCCCCAAGGCATTTAAACAAAAACATTTGGCAGGTTCATCTGTTCCATTCTGTCCTCTAGAGAAGCAAACCCCTGGTTCTTGGTCACAAATTGAGCCAAGTTCCTTCAGAGTCAGAGGCAAAAACTACCTTAGGGATAAGAAGAAAGAGTTTGCTTCAAGCAGTGCTGCTTTTTATCCTCTTGGTGCTGACCTCTTTTTGTCTTCTCGAAAAATTGATCATATTGCTCGTTTTATACAAATTCCTTCAATAAACATACCTGGGGACGCCCCTTCTATTCTTATTGTAAATATTCAGATACCATTGTATCCTGCCGCTATCTTCCAAAGTGAAAATGATGGTGAAGGAATGAATGTGGTTTTGTACTTTAAACTATCTGAAAAATACTCTAAAGACCTTCCAGACCAATTCCGGGAAAGCATTAGTAAATTGATCAATGATGAAGTGGAGAGAGTAAAAGGCTTCCCTCTAGACACAATTGCACCCTTTAGGGAGAGATTAAAAATTTTAGGCAGAGTGGCAAATTTGGAGAATCTGTCTTTAAGCACAACTGAAAAGAAGCTTATGAATGCTTACAACGAAAAACCAGTTCTCTCACGTCCTCAGCACGAATTTTTCTTGGGAGAAAACTATCTCGAGATAGATTTGGATGTACACAGATTTAGCTATATTGCAAGAAAGGGATTTGAAGGCTTCATTGAAAGACTGAAGCTATGTAACCTAGATTTCGGTCTGACAATTCAGGGAAACAAGGCCGAAGACTTGCCAGAGCATTTATTATGTGCAATACGGTTGAATAAACTTGACTACAGCAACTTCAACCAGTTTGGCTTTTAA
Predicted protein sequences of Glyma19g02080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g02080.1 sequence type=predicted peptide gene model=Glyma19g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGVCGSRPKVNEEDLSSKKKNNNNNNHRRRRRRILRRRVSSRKIEANNVSHSNSALQASNRASDAAWFDSTSALDSECDDEFYSVYDGEVSTGHADEIGEDRKLSLDHCGILPNNCLPCLTSNAIAVEKRRPMSPDTPSSRRKSLSKLSFKWREGSSDMTLLSPKAFKQKHLAGSSVPFCPLEKQTPGSWSQIEPSSFRVRGKNYLRDKKKEFASSSAAFYPLGADLFLSSRKIDHIARFIQIPSINIPGDAPSILIVNIQIPLYPAAIFQSENDGEGMNVVLYFKLSEKYSKDLPDQFRESISKLINDEVERVKGFPLDTIAPFRERLKILGRVANLENLSLSTTEKKLMNAYNEKPVLSRPQHEFFLGENYLEIDLDVHRFSYIARKGFEGFIERLKLCNLDFGLTIQGNKAEDLPEHLLCAIRLNKLDYSNFNQFGF*