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Report for Sequence Feature Glyma19g02041

Feature Type:gene_model
Chromosome:Gm19
Start:1770206
stop:1772038
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28450AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr3:10667359-10669176 FORWARD LENGTH=605 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF477Panther SUBFAMILY NOT NAMED JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_G7KK02UniRef Annotation by Michelle Graham. Most informative UniRef hit: LRR receptor-like serine/threonine-protein kinase FEI n=1 Tax=Medicago truncatula RepID=G7KK02_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233BF55UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BF55 related cluster n=1 Tax=unknown RepID=UPI000233BF55 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02041 not represented in the dataset

Glyma19g02041 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g04890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02041.1   sequence type=CDS   gene model=Glyma19g02041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGCAGCAACACCTTTTCCTCCTCGCTCCTTCTGTTGAGCTTGTTGGGGTTCCACCTCTTCTTTGTTTCGTCGCAGGTCGAAGACGACGTGACATGTCTCAAGGGCATCAAAGAAACCCTCTCCGACCCTCTGAACCGCCTCAGCAACTGGCGCTTCGACAACACAACCGTAGGTTTCATCTGCGATTTTGTCGGCGTGTCTTGCTGGAACCAAAGGGAGAACCGCGTCATAGGTTTGGACCTCCAAGACTTCAAGCTCTCGGGTAAGATCCCCGAGGCTCTAAAATACTGTGGAAATAGCATTCAAAGGTTGGATCTTGCTTCAAATTCTTTCTCTTCGGAGATCCCACATGAGATCTGTACTTGGATGCCGTTTTTGGTTTCTATAGATTTGTCAAGTAACCAGCTTTCTGGGGTTATTCCACCCACAATTGATAACTGTTCATATCTTAATGAGTTGGTGTTGTCGAATAATCAGCTTTCTGGTTCGATTCCATTTGAGTTTGGGAATTTGGGTAGGCTCAAGAAGTTTTCTGTGGCCAATAATAGGCTTACTGGAACAATTCCTGCGTTTTTCAATGGATTTGATAGGGAGGGTTTTGAAGGGAATAGTGGGTTATGTGGGGGTCCTCTTGGAGGAAAGTGTGGTGGGATTAGTAAGAAGAATCTTGCTATTATTATTGCTGCTGGGGTGTTTGGTGCTGCTGCTTCATTGTTGCTGGCTTTTGGGTTGTGGTGGTGGTACCATTTGAGTGGGAAGAATAAGAAGAAGGGTTATGGGGTTGGTTCTGGTGGTGTTGGTGGTGGTGGTGGTGGTGATTGGGCTATGAGGTTAAGAGGGTATAAGCTTGTGCAGGTTAGTCTCTTTCAGAAGCCTATTGTGAAGTTGAAGTTGGGGGATTTGATGGCTGCTACTAGTAATTTCAGCGAGGAGAATGTTCTTTTCACAACCAGGACGGGAGCAACGTATAAGGCTGATCTTCCGGATGGGTCTGCACTCGCGGTGAAGCGGTTGAGTGTGTGCAGGATCGGGGAGAAGCAGTTTGGGATGGAGATGAATCGGTTGGGGCAGGTTAGGCACCCGAATTTGGCGCCACTGTTGGGGAACGGTGGTGATGCGTTGGATTGGTTGATGAGGTTTAGGATTGGGTTGGGTGCGGCGAGGGGGCTTGCGTGGCTGCACCATGGCTGCCACCCTCCGATCATACAGCAGAACATTTGCTCCAGTGTGATTCTTGTTGACGAGGAGTTCGATGCCCGTTTGTGGAATGGTGATTGGGGGGAGCTCGGGTACATTGCGCCAGAGTATCCTAGTACACTTGTTGCTTCGTTGAAAGGGGATGTGTATGGGTTTGGTATTTTGCTTTTGGAGTTGGTGACTGGGCGAAAACCTCTTGATGTAAGCAATGGGGAGGTAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAATATGCATTCTAGTTCTGGCCGAATCAAGGATTGCATTGATAAAGCCATATCCGGAAGGGGACACGATGAGGAGATTCTGCAGTTTCTGAAAACTGCAATGAATTGTGTGGTTTCTCGCCCCAAGGATAGATGGTCTATGTACCAGGTTTATCATTCCATAAAGAGCATATCCAAAGAACAGAGTTTCTTTGAACATGATGATGAATTTCCCTTGATCTTTGGTAAGCCAGAAAACGAGGTTGTGACATAG

>Glyma19g02041.1   sequence type=predicted peptide   gene model=Glyma19g02041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRSNTFSSSLLLLSLLGFHLFFVSSQVEDDVTCLKGIKETLSDPLNRLSNWRFDNTTVGFICDFVGVSCWNQRENRVIGLDLQDFKLSGKIPEALKYCGNSIQRLDLASNSFSSEIPHEICTWMPFLVSIDLSSNQLSGVIPPTIDNCSYLNELVLSNNQLSGSIPFEFGNLGRLKKFSVANNRLTGTIPAFFNGFDREGFEGNSGLCGGPLGGKCGGISKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLSGKNKKKGYGVGSGGVGGGGGGDWAMRLRGYKLVQVSLFQKPIVKLKLGDLMAATSNFSEENVLFTTRTGATYKADLPDGSALAVKRLSVCRIGEKQFGMEMNRLGQVRHPNLAPLLGNGGDALDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSSVILVDEEFDARLWNGDWGELGYIAPEYPSTLVASLKGDVYGFGILLLELVTGRKPLDVSNGEVEFKGSLVDWVNMHSSSGRIKDCIDKAISGRGHDEEILQFLKTAMNCVVSRPKDRWSMYQVYHSIKSISKEQSFFEHDDEFPLIFGKPENEVVT*







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