SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42740 | AT | Annotation by Michelle Graham. TAIR10: Sugar isomerase (SIS) family protein | chr5:17136080-17140622 FORWARD LENGTH=560 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004347 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate isomerase activity | SoyBase | N/A | ISS |
| KOG2446 | KOG | Glucose-6-phosphate isomerase | JGI | ISS | |
| PTHR11469 | Panther | GLUCOSE-6-PHOSPHATE ISOMERASE | JGI | ISS | |
| PF00342 | PFAM | Phosphoglucose isomerase | JGI | ISS | |
| UniRef100_G7KJZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate isomerase n=1 Tax=Medicago truncatula RepID=G7KJZ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EA33 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA33 related cluster n=1 Tax=unknown RepID=UPI000233EA33 | SoyBase | E_val: 0 | ISS |
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Glyma19g02031 not represented in the dataset |
Glyma19g02031 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g017200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g02031.1 sequence type=CDS gene model=Glyma19g02031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCGTCTACTCTCATCTGTGACACTCAGCAATGGAAGGAGTTAAAGGCTCATGCTGAGGATGTAGAAAAGACTCATTTACGTGATTTATTGAGCGATGATGAGAGATCCCAGTCAATGGTGGTTGAATTTGATGGAATTCTATTGGACTACTCAAGGCAGCAAGCCACTCTTGAAACAAGGGAAAAACTCTTCAAATTGGCAGAGGTTGCATCCCTCAAGCAAAAGATAAACCAGATGTACAATGGGGAGTATATAAACAGCACTGAAAATAGATCAGTACTTCATGTAGCTCTTCGTGCTCCAAGAGATGCTGTTATACAGAGTGATGGAAACAATGTTGTCCCAGATGTTTGGAATGTTCTGGACAAGATCCAGGAGTTCTCTGAGCGGGTCCGCAGTGGATCTTGGGTTGGAGCTACAGGAAAGGAATTGAAGGATGTTGTTGCCGTTGGTATTGGTGGCAGTTTCTTAGGTCCATTATTTGTGCACACAGCTCTTCAAACAGATCCTGAAGCAATTGAATCTGCAAGAGGGCGTCAGCTACGCTTTCTTGCAAATGTTGATCCAATTGATGTTGCTAGAAACATCACAGGATTAAATCCTGAAACAACCCTAGTGGTGATTGTTTCAAAGACTTTTACGACCGCCGAAACCATGTTGAATGCCCGAACACTCAGGGAATGGATTTCTAATGCTCTAGGGCCCTTAGCAGTTGCAAAACATATGGTGGCAGTCAGTACCAATCTCACACTTGTGGAAGAGTTTGGCATTGATCCCAATAATGTTTTTGCATTTTGGGACTGGGTTGGTGGCCGATATAGTGTCTGCAGTGCTGTTGGAGTATTGCCTTTATCCCTACAATATGGTTTCTCAGTAATTGAGAAGTTTTTAAAGGGAGCTTCCAGCATTGATCAACATATGTATTCAGAACCATTTGAAAGAAATCTACCTGTGCTTTTGGGAATGTTGAGTGTATGGAATGTCTCATTTCTTGGATATCCTGCCCGGGCTATCTTACCCTATTCTCAAGCCCTGGAGAAATTTGCCCCACACATTCAACAGGTTAGCATGGAAAGTAATGGCAAGGGTGTTTCAATTGATGGTGTTCCACTACCATTTGAGGCTGGTGAAATTGATTTCGGTGAACCAGGAACAAATGGGCAGCACAGTTTTTATCAACTTATACACCAGGGACGCGTTATTCCTTGTGATTTTATTGGAGTTGTGAAAAGTCAGCAACCTGTTTATTTGAGTGGTGAGGTTGTGAGCAACCATGATGAGCTAATGTCAAACTTTTTTGCACAACCAGATGCCCTTGCCTATGGGAAGACCGCTGAACAATTGCAAAAGGAGAATGTTCCTCCACATCTTGTGCCACACAAGACATTCTCAGGCAACCGACCTTCTCTCAGCCTTCTGCTTCCATCATTGAATGCTTATAATATTGGACAGTTGTTGGCAATCTATGAACACAGAGTTGCTGTAGAAGGTTTTATTTGGGGCATCAATTCTTTTGACCAGTGGGGAGTGGAGCTTGGGAAGTCATTAGCCTCTCAAGTGAGAAAGCAACTTAATGCATCTCGCACAAAAGGAGAACCGGTTCAAGGCTTTAACTTCAGTACTACTGCTATGTTGACAAGATACCTTCAGGCAAGTGCAGACGTCCCGGCTGATCTTCCAACTCGCTTACCTCAGATTTAA
>Glyma19g02031.1 sequence type=predicted peptide gene model=Glyma19g02031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSTLICDTQQWKELKAHAEDVEKTHLRDLLSDDERSQSMVVEFDGILLDYSRQQATLETREKLFKLAEVASLKQKINQMYNGEYINSTENRSVLHVALRAPRDAVIQSDGNNVVPDVWNVLDKIQEFSERVRSGSWVGATGKELKDVVAVGIGGSFLGPLFVHTALQTDPEAIESARGRQLRFLANVDPIDVARNITGLNPETTLVVIVSKTFTTAETMLNARTLREWISNALGPLAVAKHMVAVSTNLTLVEEFGIDPNNVFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVIEKFLKGASSIDQHMYSEPFERNLPVLLGMLSVWNVSFLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLSGEVVSNHDELMSNFFAQPDALAYGKTAEQLQKENVPPHLVPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRVAVEGFIWGINSFDQWGVELGKSLASQVRKQLNASRTKGEPVQGFNFSTTAMLTRYLQASADVPADLPTRLPQI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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