Report for Sequence Feature Glyma19g02020
Feature Type: gene_model
Chromosome: Gm19
Start: 1729371
stop: 1736065
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g02020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G74860 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:28123432-28125600 FORWARD LENGTH=400
SoyBase E_val: 7.00E-33 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1N603 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N603_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LMC6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F14D16.16 n=1 Tax=Arabidopsis thaliana RepID=Q9LMC6_ARATH
SoyBase E_val: 7.00E-28 ISS
Expression Patterns of Glyma19g02020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g02020
Paralog Evidence Comments
Glyma13g04871 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g02020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g017100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g02020
Coding sequences of Glyma19g02020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g02020.1 sequence type=CDS gene model=Glyma19g02020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGGAAGAGAGAGAAAATCTTCTCTCACTTCACAAACGGAACCTCTCGACTACCCTCATTCCCGTTTCTTCACTCCAATGCAACAACAACATTCTCATGAAATGGTGGCTTTGAAGAAGGCATATGCGGATGTGATTCTGAATACTGTGAAGGAGGCTGCAGGTAGGGTAATGGTGGCGGAAAGGAGAGCTCTTATGTTCCAGCAGGAGCTTGCTTCATCCAAAGAAGAGGCTCTTCATATGTTAATGCGTTTGAAGCAGATGATGGATGCTAAGACAGCTGAAGCAGAAAAGGCATCATTGGAGCAGCAAAGAAAAATTGATGAGCTTGAAGCTCAATTGAATGAAGCTGAGGATATCGTAACAGATCTAAGGGCAGAGTTGAAGCTTGTATATCTGGAGTTAGAGACGGCAAGGAATAACCAGGTCCAGCCTTTGAATGGACAGAATGAAAAGCAAGTTGTAACTTTTCAGGAGAGTGCAAAACCTGAGATTTCAATATCCTCTCCTCATAAAGAACTTGAATGTGTAACGAGCTGTGATGTGGCAAACAAATCACTGACTATGAACGTTTTAGATAATAAGTGTTGTAATTCAAAACAACAAACTGAGCAATTGTGCATCTATAATTTGGAGGATTCTTGTGGTCATAACTCTGACTTTGCTTCCATCATCACGAGAAGCAAGGAACCTGAACTTCGCCGAAATGGATTTACTCAGAGAGTCCGTGCACTTGAAGGAAATTTGCTGGATGAAAAGCTGCTCAAGCAAGATGTACACAATCAACATTATGGTAAAAAACTCGGGATCATTGCTAAAGATAGTAATGGGCAAGTTGCAAAATATAGTGCATTGACTGAGAAAATGGAAATTAAGAAGCACGTTAAGCACCATAAAATACCAAAACGGAAGATATATTCCTATTACTGGTCTCGCTTTCTTTCTTCTTGTAAAATTCATTTAAACGACAACTGTAAATCCAGCAAAGGTGTGTGCTTTCTACCTTCTATCAAGCTTGGTGCCATTAGCAAATGGAAAAGCAAGAGGAGAAGACATAGACATTTGGGAATGAAATCTTTTGCTTTCAGGAGTTGTAAACCATCATTTTTTCTTAAGCAGTGCTCATCTGTCTGTAATAATGAAAAATGTTGTGAAGATGAATCTGGTGCAAAGATGAAGTCATTGCCACCTTTGACTGATGTAGAACCTGTGCATAGGACCATTGGTGTTACAGAAAGTATCCAGGCTGTAAATAAATTTGAGCTTTTATTAAATTTAGAAGAAAATGCTGCGCAGAATCTAACAGGTCCAAGTTCTGATATGAAAGTTGAGGGTTTTGATTTTCCATCTACAGATACTGATTTGGAAGATGCAAAAGCTTTTGAAAAAAATGATAGATCTGCCAGTCAAGTAAATGACAGTAGGCCTCTGAAGTACACATTCCAAAGGAAGCGAAAAAAAGAATCCTTGGGAAACGCAGACCAAAACATTGATTCTGAGAAGCGTACAGTGGAGAGGAGGGTGGAAGACAAACAAAATTGTGCAATAGAACTCCAAAATCTAGCATGA
Predicted protein sequences of Glyma19g02020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g02020.1 sequence type=predicted peptide gene model=Glyma19g02020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGRERKSSLTSQTEPLDYPHSRFFTPMQQQHSHEMVALKKAYADVILNTVKEAAGRVMVAERRALMFQQELASSKEEALHMLMRLKQMMDAKTAEAEKASLEQQRKIDELEAQLNEAEDIVTDLRAELKLVYLELETARNNQVQPLNGQNEKQVVTFQESAKPEISISSPHKELECVTSCDVANKSLTMNVLDNKCCNSKQQTEQLCIYNLEDSCGHNSDFASIITRSKEPELRRNGFTQRVRALEGNLLDEKLLKQDVHNQHYGKKLGIIAKDSNGQVAKYSALTEKMEIKKHVKHHKIPKRKIYSYYWSRFLSSCKIHLNDNCKSSKGVCFLPSIKLGAISKWKSKRRRHRHLGMKSFAFRSCKPSFFLKQCSSVCNNEKCCEDESGAKMKSLPPLTDVEPVHRTIGVTESIQAVNKFELLLNLEENAAQNLTGPSSDMKVEGFDFPSTDTDLEDAKAFEKNDRSASQVNDSRPLKYTFQRKRKKESLGNADQNIDSEKRTVERRVEDKQNCAIELQNLA*