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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g01900

Feature Type:gene_model
Chromosome:Gm19
Start:1540938
stop:1544985
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14970AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 579 Blast hits to 397 proteins in 95 species: Archae - 0; Bacteria - 294; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:4847368-4848760 FORWARD LENGTH=355 SoyBaseE_val: 1.00E-111ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
UniRef100_G7JJU3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM23 n=1 Tax=Medicago truncatula RepID=G7JJU3_MEDTR SoyBaseE_val: 3.00E-149ISS
UniRef100_I1N5Z4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Z4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01900 not represented in the dataset

Glyma19g01900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g04770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g016000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01900.1   sequence type=CDS   gene model=Glyma19g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCCTTTCGCCCCGTCATCCACCCCCGCGTCACCGACCGGTCACTCTTTCAGTTCCTCCCACCCAAGCCTCCCCCTCTTCCAACTTCGCCACCTCCCTCCGTTCTCCTCCCCCTCACGCGTCGCCGCGGCGGCTTCCTTCCCTCCTGCCTCTCCGACGACGCCGTCTCCACCCGCAACTTCGACCGCGGCTTCACCGTGATCGCCGCCATGCTCCGCCGCATCGAGCCCCTCGACAACTCCGCCATCTCCAAAGGCGTGTCCCCCGCCGCCAGAGACTCCATGAAGCAGACCATCTCCACCATGCTCGGATTGCTACCCTCCGATCACTTCGCCGTCACCATCACCGTCTCCAAACACCCCCTCCACCGCCTCCTCTTCTCCTCCATCGTCACCGGGTACACTCTATGGAATGCGGAGTACAGGATGTCTCTGACAAGGAACTTGGATATATCAGGTTCCAGGGATGAGGGGTCAGATTGTGAAACGCGTTCAGAGGTTTTGGAGGTTAAGGATGGAGCAAAAACAGTAGGTGATGAGAAAATTGAGGTTGTTAATGATTTGGAAAGTTGCAGCTGCAGTGGTAACCTGAAAGAATTTGGAGATTTGCCTCCTCAGGCTCTGAGTTACATTCAGCAGTTGCAGTCTGAGTTGACAAGTGTGACAGAGGAACTGAATGCCCAGAAGCAGGAAATGATGCAATTAGAATATGACAAGGGAAAATGGAACAATTTGTTGGAATATCTTCGGTCTCTGGATCCTAATATGGTGACTGAACTGTCCCGGCCTTCATCATTAGAAGTGGAGGATATAATTCACCAACTTGTTCAGAACATATTGAGAAGATTCTTTGTGGATGATGGTAGCTCTAGTTTTATGGAACAATCAGTGGAAGGAAATGTAGACAATCGCGCGGGCAGTGGTGATGAGCTTAGTAATACGATAGCCACTTCTCGTGATTACCTAGCAAAGTTGCTTTTCTGGTGTATGTTATTGGGTCATCACTTGAGAGGGTTGGAAAATAGATTGCATCTGAGCTGTGTTGTTGGACTATTGTAG

>Glyma19g01900.1   sequence type=predicted peptide   gene model=Glyma19g01900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSFRPVIHPRVTDRSLFQFLPPKPPPLPTSPPPSVLLPLTRRRGGFLPSCLSDDAVSTRNFDRGFTVIAAMLRRIEPLDNSAISKGVSPAARDSMKQTISTMLGLLPSDHFAVTITVSKHPLHRLLFSSIVTGYTLWNAEYRMSLTRNLDISGSRDEGSDCETRSEVLEVKDGAKTVGDEKIEVVNDLESCSCSGNLKEFGDLPPQALSYIQQLQSELTSVTEELNAQKQEMMQLEYDKGKWNNLLEYLRSLDPNMVTELSRPSSLEVEDIIHQLVQNILRRFFVDDGSSSFMEQSVEGNVDNRAGSGDELSNTIATSRDYLAKLLFWCMLLGHHLRGLENRLHLSCVVGLL*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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