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Report for Sequence Feature Glyma19g01890

Feature Type:gene_model
Chromosome:Gm19
Start:1526205
stop:1533632
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14950AT Annotation by Michelle Graham. TAIR10: golgi alpha-mannosidase II | chr5:4837484-4841792 REVERSE LENGTH=1173 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006013GO-bp Annotation by Michelle Graham. GO Biological Process: mannose metabolic process SoyBaseN/AISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004559GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0015923GO-mf Annotation by Michelle Graham. GO Molecular Function: mannosidase activity SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
KOG1958 KOG Glycosyl hydrolase, family 38 - alpha-mannosidase JGI ISS
PTHR11607Panther ALPHA-MANNOSIDASE JGI ISS
PTHR11607:SF4Panther MANNOSIDASE ALPHA CLASS 2A JGI ISS
PF01074PFAM Glycosyl hydrolases family 38 N-terminal domain JGI ISS
PF07748PFAM Glycosyl hydrolases family 38 C-terminal domain JGI ISS
PF09261PFAM Alpha mannosidase, middle domain JGI ISS
UniRef100_G7KJH1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alpha-mannosidase-like protein n=1 Tax=Medicago truncatula RepID=G7KJH1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N5Z3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Z3_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01890 not represented in the dataset

Glyma19g01890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g04761 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g015900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01890.1   sequence type=CDS   gene model=Glyma19g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTTCTCCTCCTCTCGCCGCGGAACATCCTGGTCCTCCTCGATCCTCCCATCCTCAAACCCACACAAATCAAAAGCACCCAGAAAGGGAAGAAAACGCGCGTTGGTGAAAGACTTCATCTTCTCCAACTTCTTCGCCATTGGCCTCGTCCTCTCCCTCTCCCTCTTCCTCCTCATCCTCCTCCGATCCGGCGTCCCCAAGCCACTCTCCACGCGCTTTCGCGCCACCACGCGCCCCTCACGCTCCCGCAAAACCGTCATACGAAAGCCCCTTCCTACCGGAGCCAATCTCAGCACCCTCGCCGGCGCCGCCGTGGACGTCACCACCAAGGCGCTGTACGACAAGATTGAGTTTTTGGACGTCGACGGCGGCGCGTGGAAGCAAGGGTGGAGTGTGACGTACAGGGGAAACGAGTGGGACTCGGAGAAGCTGAAGGTGTTCGTGGTGCCGCACTCGCATAACGATCCTGGATGGAAGCTCACTGTGGACGAGTACTATGATAGACAATCGAGGCATATACTTGATACCATTGTGCAAACACTATCCAAGGATTCTCGACGGAAGTTCATATGGGAAGAGATGTCGTACTTAGAAAGATGGTGGAGGGATGCATCAGATGAGATGAAGGAATCCTTCATCAATTTGGTAAAAAATGGACAGCTAGAAATTGTTGGAGGCGGCTGGGTGATGAATGATGAGGCCAATTCCCATTATTTTGCTATAATTGAACAGATAGCAGAAGGAAATATGTGGTTGAATGACACCATTGGGTTTGTTCCAAAAAATTCTTGGGCCATAGATCCATTTGGATACTCGTCTACCATGGCATATCTTCTGCGTCGCATGGGTTTTGACAACATGCTTATTCAGAGGACCCATTACGAGCTGAAGAAGGAGCTTGCGTGGCATAAAAATTTAGAATACATATGGCGTCAAAGCTGGGATGCAGAGGAAACCACTGATATATTTGTCCATATGATGCCCTTTTATTCGTATGATATACCTCATACATGTGGCCCAGAGCCTGCTATTTGTTGTCAGTTTGATTTTGCACGCATGTCGGGTTTTGCTTATGAACAATGCCCATGGGGGCAGTATCCTGTGGAGACCACTCAGGAAAATGTTCAGGAAAGAGCTCTTAAATTACTGGATCAGTACAAGAAAAAGTCAACTTTGTACCGAACCAATACTCTTCTTGTTCCTCTTGGAGATGATTTTCGATATATTAATGTCGAAGAAGCAGAAGCCCAATTCAGAAATTACCAAATGCTGTTTGATTATATCAATTCAAACCCCAGTTTGAATGCAGAGGCCAAGTTTGGTACTTTGGAAGATTACTTTGTAACCCTGCGTGAGGAAGCAGAGAGAATAAATTACTCATCTCCTGGTGAAATAGGATCCGGTCTAGTTGAAGGTTTTCCTTCTCTATCCGGTGACTTTTTTACTTATGCTGATCGGCAACAAGACTACTGGAGTGGTTATTATGTTTCACGACCCTTCTTCAAGGCTGTTGATAGGGTACTAGAACAGACACTTCGTGCCACTGAAATGATGGTAGCTCTAATACTTGGCACCTGTCGGAGATCATATTGTGAAAAGTTCGCAATGGGGTTTTCTTATAAGTTGACAGCTGCTAGAAGGAACTTGGCTCTTTTTCAGCATCATGATGGGGTGACTGGTACTGCAAAAGATCATGTGGTTATGGACTATGGAATGCGCATGCATACTTCATTACTGGACTTGCAAATTTTTATGTCCAAGGCAGTTGAGGCACTTCTTGGAATCCGCTATGATAAACTAGACCACAGTCCTGCCCAGTTTGAGCCAGCAATAGTGAGATCTAAATATGATGCCCAACCATTGCATAAAGTGATTAGTGTTCATGAGGGTTCTTACGAATCAGTGGCCTTTTTTAATCCTTTGGAGCAAACCAGAGAAGAAGTTGTAATGGTTGTTGTTGACAGTCCTTATGTTACAGTTGTTGATTCTAACTGGACTTGCGTTCAGAGCCAGATTTTGCCCGAGTTGCAGTATCATAGTAGCAAGATCTTTACTGGGAAGCATCGACTTTACTGGAAAGTTTCTGTTCCTGCAATGGGATTGGAAACTTATTATATTTCCACTAGCTTTGGTGAGTGTGAAAAGGCCAGGCCTGCAAAGTTGAAAATGTTCTCTAAGTCTAGCTCGGTTGCTTGTCCAACACCCTATTCTTGTGTGGAAGTAGAGGCTGATGTGACTGAAATTGAGAATCAGCATCAAAAACTAACTTTTGATGTAAAGTACGGTTTGTTGCAGAAGATTATCTCTAGTTCCCCAAATACTATAAATGAGGAAATTGGTATGTATTCTAGTTCTGGTGGGGCATACTTGTTCATGCCCCACGGCGATGCCCAGCCCATTATTGAAGAAGGTGGGCAGTTGTTGGTGTCAGAGGGTCCTTTGATGCAGGAAGTATACTCTTATCCAAGGACAGCTTGGGATAAATCCCCCATTTCTCATAGCACCCGAATATATAGTGGAGAGAGTACAGTGCAAGGGTTTGCCATTGAAAAGGAATATCATGTTGAACTTCTTGGCCGTGATTTCAATGATAGGGAATTGATAGTTAGATATAAAACAGATATTGATAACAAGAAGATTTTTTACTCAGATTTAAATGGATTTCAGATGAGCCGAAGAGAAACTTACGATAAGATTCCTCTGCAAGGCAATTACTACCCCATGCCCTATCTAGCATTCATACAAGGATCAAATGGTCAGCGATTTTCTGTCCATTCCCGGCAATCATTAGGTGTGGCTAGCCTTAAAAATGGATGGCTAGAGATAATGCTAGACCGCCGGTTGGTAAGAGATGACGGTCGTGGTCTGGGACAAGGAGTGATGGATAACCGTGTGATGAATGTTGTCTTCCACCTAACCATGGAAGCCAATGTTTCTGCAACATCAAATTTGGTTCCCACACCTTTTCCTTACAGCCCTTCTCTTTTATCTCACCGAGTTGGTTCTCACTTGAACTATCCAATACATGCATTTGTTTCCAAGAAACCGCAGGATATGTCTGTGAAGCCACCGCCTAGATCCTTTTCTCCTCTTGCCACCCCCTTACCGTGCGATTTGCACATAGTGAACTTCAAGGTTCCCAAGCCCTTAAAGTTTTTGCAGCAACCACCTGAAGGTCCTAGATTCGGGCTAATTTTGCACAGGCGACATTGGGATTCTTCGTACTGCCGGAAGGGAAGATCACAATGCACTAATCTGGCCGACAACACCGTGAATCTGTTCAGCATGTTCAAGGAACTTACAGTCTCGAAGGCTAAAGCAACTTCCCTTAATCTCTTGCACGAAGACCCTGAAGTAATGGGATTCTCAGAGCAGTTTGGAGATCTTGCAAAAGAGGGGAATGTAGCCATATCTCCAATGGAAATACAAGCCTACAGATTGGAATTGAGGCCACAACCACAATAG

>Glyma19g01890.1   sequence type=predicted peptide   gene model=Glyma19g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFSSSRRGTSWSSSILPSSNPHKSKAPRKGRKRALVKDFIFSNFFAIGLVLSLSLFLLILLRSGVPKPLSTRFRATTRPSRSRKTVIRKPLPTGANLSTLAGAAVDVTTKALYDKIEFLDVDGGAWKQGWSVTYRGNEWDSEKLKVFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVQTLSKDSRRKFIWEEMSYLERWWRDASDEMKESFINLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIAEGNMWLNDTIGFVPKNSWAIDPFGYSSTMAYLLRRMGFDNMLIQRTHYELKKELAWHKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMSGFAYEQCPWGQYPVETTQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYINVEEAEAQFRNYQMLFDYINSNPSLNAEAKFGTLEDYFVTLREEAERINYSSPGEIGSGLVEGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALILGTCRRSYCEKFAMGFSYKLTAARRNLALFQHHDGVTGTAKDHVVMDYGMRMHTSLLDLQIFMSKAVEALLGIRYDKLDHSPAQFEPAIVRSKYDAQPLHKVISVHEGSYESVAFFNPLEQTREEVVMVVVDSPYVTVVDSNWTCVQSQILPELQYHSSKIFTGKHRLYWKVSVPAMGLETYYISTSFGECEKARPAKLKMFSKSSSVACPTPYSCVEVEADVTEIENQHQKLTFDVKYGLLQKIISSSPNTINEEIGMYSSSGGAYLFMPHGDAQPIIEEGGQLLVSEGPLMQEVYSYPRTAWDKSPISHSTRIYSGESTVQGFAIEKEYHVELLGRDFNDRELIVRYKTDIDNKKIFYSDLNGFQMSRRETYDKIPLQGNYYPMPYLAFIQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVRDDGRGLGQGVMDNRVMNVVFHLTMEANVSATSNLVPTPFPYSPSLLSHRVGSHLNYPIHAFVSKKPQDMSVKPPPRSFSPLATPLPCDLHIVNFKVPKPLKFLQQPPEGPRFGLILHRRHWDSSYCRKGRSQCTNLADNTVNLFSMFKELTVSKAKATSLNLLHEDPEVMGFSEQFGDLAKEGNVAISPMEIQAYRLELRPQPQ*







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