SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14950 | AT | Annotation by Michelle Graham. TAIR10: golgi alpha-mannosidase II | chr5:4837484-4841792 REVERSE LENGTH=1173 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006013 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mannose metabolic process | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004559 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0015923 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannosidase activity | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| KOG1958 | KOG | Glycosyl hydrolase, family 38 - alpha-mannosidase | JGI | ISS | |
| PTHR11607 | Panther | ALPHA-MANNOSIDASE | JGI | ISS | |
| PTHR11607:SF4 | Panther | MANNOSIDASE ALPHA CLASS 2A | JGI | ISS | |
| PF01074 | PFAM | Glycosyl hydrolases family 38 N-terminal domain | JGI | ISS | |
| PF07748 | PFAM | Glycosyl hydrolases family 38 C-terminal domain | JGI | ISS | |
| PF09261 | PFAM | Alpha mannosidase, middle domain | JGI | ISS | |
| UniRef100_G7KJH1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-mannosidase-like protein n=1 Tax=Medicago truncatula RepID=G7KJH1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N5Z3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Z3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g01890 not represented in the dataset |
Glyma19g01890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g04761 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g015900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01890.1 sequence type=CDS gene model=Glyma19g01890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCTTCTCCTCCTCTCGCCGCGGAACATCCTGGTCCTCCTCGATCCTCCCATCCTCAAACCCACACAAATCAAAAGCACCCAGAAAGGGAAGAAAACGCGCGTTGGTGAAAGACTTCATCTTCTCCAACTTCTTCGCCATTGGCCTCGTCCTCTCCCTCTCCCTCTTCCTCCTCATCCTCCTCCGATCCGGCGTCCCCAAGCCACTCTCCACGCGCTTTCGCGCCACCACGCGCCCCTCACGCTCCCGCAAAACCGTCATACGAAAGCCCCTTCCTACCGGAGCCAATCTCAGCACCCTCGCCGGCGCCGCCGTGGACGTCACCACCAAGGCGCTGTACGACAAGATTGAGTTTTTGGACGTCGACGGCGGCGCGTGGAAGCAAGGGTGGAGTGTGACGTACAGGGGAAACGAGTGGGACTCGGAGAAGCTGAAGGTGTTCGTGGTGCCGCACTCGCATAACGATCCTGGATGGAAGCTCACTGTGGACGAGTACTATGATAGACAATCGAGGCATATACTTGATACCATTGTGCAAACACTATCCAAGGATTCTCGACGGAAGTTCATATGGGAAGAGATGTCGTACTTAGAAAGATGGTGGAGGGATGCATCAGATGAGATGAAGGAATCCTTCATCAATTTGGTAAAAAATGGACAGCTAGAAATTGTTGGAGGCGGCTGGGTGATGAATGATGAGGCCAATTCCCATTATTTTGCTATAATTGAACAGATAGCAGAAGGAAATATGTGGTTGAATGACACCATTGGGTTTGTTCCAAAAAATTCTTGGGCCATAGATCCATTTGGATACTCGTCTACCATGGCATATCTTCTGCGTCGCATGGGTTTTGACAACATGCTTATTCAGAGGACCCATTACGAGCTGAAGAAGGAGCTTGCGTGGCATAAAAATTTAGAATACATATGGCGTCAAAGCTGGGATGCAGAGGAAACCACTGATATATTTGTCCATATGATGCCCTTTTATTCGTATGATATACCTCATACATGTGGCCCAGAGCCTGCTATTTGTTGTCAGTTTGATTTTGCACGCATGTCGGGTTTTGCTTATGAACAATGCCCATGGGGGCAGTATCCTGTGGAGACCACTCAGGAAAATGTTCAGGAAAGAGCTCTTAAATTACTGGATCAGTACAAGAAAAAGTCAACTTTGTACCGAACCAATACTCTTCTTGTTCCTCTTGGAGATGATTTTCGATATATTAATGTCGAAGAAGCAGAAGCCCAATTCAGAAATTACCAAATGCTGTTTGATTATATCAATTCAAACCCCAGTTTGAATGCAGAGGCCAAGTTTGGTACTTTGGAAGATTACTTTGTAACCCTGCGTGAGGAAGCAGAGAGAATAAATTACTCATCTCCTGGTGAAATAGGATCCGGTCTAGTTGAAGGTTTTCCTTCTCTATCCGGTGACTTTTTTACTTATGCTGATCGGCAACAAGACTACTGGAGTGGTTATTATGTTTCACGACCCTTCTTCAAGGCTGTTGATAGGGTACTAGAACAGACACTTCGTGCCACTGAAATGATGGTAGCTCTAATACTTGGCACCTGTCGGAGATCATATTGTGAAAAGTTCGCAATGGGGTTTTCTTATAAGTTGACAGCTGCTAGAAGGAACTTGGCTCTTTTTCAGCATCATGATGGGGTGACTGGTACTGCAAAAGATCATGTGGTTATGGACTATGGAATGCGCATGCATACTTCATTACTGGACTTGCAAATTTTTATGTCCAAGGCAGTTGAGGCACTTCTTGGAATCCGCTATGATAAACTAGACCACAGTCCTGCCCAGTTTGAGCCAGCAATAGTGAGATCTAAATATGATGCCCAACCATTGCATAAAGTGATTAGTGTTCATGAGGGTTCTTACGAATCAGTGGCCTTTTTTAATCCTTTGGAGCAAACCAGAGAAGAAGTTGTAATGGTTGTTGTTGACAGTCCTTATGTTACAGTTGTTGATTCTAACTGGACTTGCGTTCAGAGCCAGATTTTGCCCGAGTTGCAGTATCATAGTAGCAAGATCTTTACTGGGAAGCATCGACTTTACTGGAAAGTTTCTGTTCCTGCAATGGGATTGGAAACTTATTATATTTCCACTAGCTTTGGTGAGTGTGAAAAGGCCAGGCCTGCAAAGTTGAAAATGTTCTCTAAGTCTAGCTCGGTTGCTTGTCCAACACCCTATTCTTGTGTGGAAGTAGAGGCTGATGTGACTGAAATTGAGAATCAGCATCAAAAACTAACTTTTGATGTAAAGTACGGTTTGTTGCAGAAGATTATCTCTAGTTCCCCAAATACTATAAATGAGGAAATTGGTATGTATTCTAGTTCTGGTGGGGCATACTTGTTCATGCCCCACGGCGATGCCCAGCCCATTATTGAAGAAGGTGGGCAGTTGTTGGTGTCAGAGGGTCCTTTGATGCAGGAAGTATACTCTTATCCAAGGACAGCTTGGGATAAATCCCCCATTTCTCATAGCACCCGAATATATAGTGGAGAGAGTACAGTGCAAGGGTTTGCCATTGAAAAGGAATATCATGTTGAACTTCTTGGCCGTGATTTCAATGATAGGGAATTGATAGTTAGATATAAAACAGATATTGATAACAAGAAGATTTTTTACTCAGATTTAAATGGATTTCAGATGAGCCGAAGAGAAACTTACGATAAGATTCCTCTGCAAGGCAATTACTACCCCATGCCCTATCTAGCATTCATACAAGGATCAAATGGTCAGCGATTTTCTGTCCATTCCCGGCAATCATTAGGTGTGGCTAGCCTTAAAAATGGATGGCTAGAGATAATGCTAGACCGCCGGTTGGTAAGAGATGACGGTCGTGGTCTGGGACAAGGAGTGATGGATAACCGTGTGATGAATGTTGTCTTCCACCTAACCATGGAAGCCAATGTTTCTGCAACATCAAATTTGGTTCCCACACCTTTTCCTTACAGCCCTTCTCTTTTATCTCACCGAGTTGGTTCTCACTTGAACTATCCAATACATGCATTTGTTTCCAAGAAACCGCAGGATATGTCTGTGAAGCCACCGCCTAGATCCTTTTCTCCTCTTGCCACCCCCTTACCGTGCGATTTGCACATAGTGAACTTCAAGGTTCCCAAGCCCTTAAAGTTTTTGCAGCAACCACCTGAAGGTCCTAGATTCGGGCTAATTTTGCACAGGCGACATTGGGATTCTTCGTACTGCCGGAAGGGAAGATCACAATGCACTAATCTGGCCGACAACACCGTGAATCTGTTCAGCATGTTCAAGGAACTTACAGTCTCGAAGGCTAAAGCAACTTCCCTTAATCTCTTGCACGAAGACCCTGAAGTAATGGGATTCTCAGAGCAGTTTGGAGATCTTGCAAAAGAGGGGAATGTAGCCATATCTCCAATGGAAATACAAGCCTACAGATTGGAATTGAGGCCACAACCACAATAG
>Glyma19g01890.1 sequence type=predicted peptide gene model=Glyma19g01890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFSSSRRGTSWSSSILPSSNPHKSKAPRKGRKRALVKDFIFSNFFAIGLVLSLSLFLLILLRSGVPKPLSTRFRATTRPSRSRKTVIRKPLPTGANLSTLAGAAVDVTTKALYDKIEFLDVDGGAWKQGWSVTYRGNEWDSEKLKVFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVQTLSKDSRRKFIWEEMSYLERWWRDASDEMKESFINLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIAEGNMWLNDTIGFVPKNSWAIDPFGYSSTMAYLLRRMGFDNMLIQRTHYELKKELAWHKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMSGFAYEQCPWGQYPVETTQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYINVEEAEAQFRNYQMLFDYINSNPSLNAEAKFGTLEDYFVTLREEAERINYSSPGEIGSGLVEGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALILGTCRRSYCEKFAMGFSYKLTAARRNLALFQHHDGVTGTAKDHVVMDYGMRMHTSLLDLQIFMSKAVEALLGIRYDKLDHSPAQFEPAIVRSKYDAQPLHKVISVHEGSYESVAFFNPLEQTREEVVMVVVDSPYVTVVDSNWTCVQSQILPELQYHSSKIFTGKHRLYWKVSVPAMGLETYYISTSFGECEKARPAKLKMFSKSSSVACPTPYSCVEVEADVTEIENQHQKLTFDVKYGLLQKIISSSPNTINEEIGMYSSSGGAYLFMPHGDAQPIIEEGGQLLVSEGPLMQEVYSYPRTAWDKSPISHSTRIYSGESTVQGFAIEKEYHVELLGRDFNDRELIVRYKTDIDNKKIFYSDLNGFQMSRRETYDKIPLQGNYYPMPYLAFIQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVRDDGRGLGQGVMDNRVMNVVFHLTMEANVSATSNLVPTPFPYSPSLLSHRVGSHLNYPIHAFVSKKPQDMSVKPPPRSFSPLATPLPCDLHIVNFKVPKPLKFLQQPPEGPRFGLILHRRHWDSSYCRKGRSQCTNLADNTVNLFSMFKELTVSKAKATSLNLLHEDPEVMGFSEQFGDLAKEGNVAISPMEIQAYRLELRPQPQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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