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Report for Sequence Feature Glyma19g01890
Feature Type: gene_model
Chromosome: Gm19
Start: 1526205
stop: 1533632
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G14950 AT
Annotation by Michelle Graham. TAIR10: golgi alpha-mannosidase II | chr5:4837484-4841792 REVERSE LENGTH=1173
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0006013 GO-bp
Annotation by Michelle Graham. GO Biological Process: mannose metabolic process
SoyBase N/A ISS
GO:0006486 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein glycosylation
SoyBase N/A ISS
GO:0006487 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004553 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds
SoyBase N/A ISS
GO:0004559 GO-mf
Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0015923 GO-mf
Annotation by Michelle Graham. GO Molecular Function: mannosidase activity
SoyBase N/A ISS
GO:0030246 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding
SoyBase N/A ISS
KOG1958
KOG
Glycosyl hydrolase, family 38 - alpha-mannosidase
JGI ISS
PTHR11607 Panther
ALPHA-MANNOSIDASE
JGI ISS
PTHR11607:SF4 Panther
MANNOSIDASE ALPHA CLASS 2A
JGI ISS
PF01074 PFAM
Glycosyl hydrolases family 38 N-terminal domain
JGI ISS
PF07748 PFAM
Glycosyl hydrolases family 38 C-terminal domain
JGI ISS
PF09261 PFAM
Alpha mannosidase, middle domain
JGI ISS
UniRef100_G7KJH1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Alpha-mannosidase-like protein n=1 Tax=Medicago truncatula RepID=G7KJH1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N5Z3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Z3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g01890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g01890
Paralog Evidence Comments
Glyma13g04761 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g01890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g015900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g01890
Coding sequences of Glyma19g01890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01890.1 sequence type=CDS gene model=Glyma19g01890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCCTTCTCCTCCTCTCGCCGCGGAACATCCTGGTCCTCCTCGATCCTCCCATCCTCAAACCCACACAAATCAAAAGCACCCAGAAAGGGAAGAAAACGCGCGTTGGTGAAAGACTTCATCTTCTCCAACTTCTTCGCCATTGGCCTCGTCCTCTCCCTCTCCCTCTTCCTCCTCATCCTCCTCCGATCCGGCGTCCCCAAGCCACTCTCCACGCGCTTTCGCGCCACCACGCGCCCCTCACGCTCCCGCAAAACCGTCATACGAAAGCCCCTTCCTACCGGAGCCAATCTCAGCACCCTCGCCGGCGCCGCCGTGGACGTCACCACCAAGGCGCTGTACGACAAGATTGAGTTTTTGGACGTCGACGGCGGCGCGTGGAAGCAAGGGTGGAGTGTGACGTACAGGGGAAACGAGTGGGACTCGGAGAAGCTGAAGGTGTTCGTGGTGCCGCACTCGCATAACGATCCTGGATGGAAGCTCACTGTGGACGAGTACTATGATAGACAATCGAGGCATATACTTGATACCATTGTGCAAACACTATCCAAGGATTCTCGACGGAAGTTCATATGGGAAGAGATGTCGTACTTAGAAAGATGGTGGAGGGATGCATCAGATGAGATGAAGGAATCCTTCATCAATTTGGTAAAAAATGGACAGCTAGAAATTGTTGGAGGCGGCTGGGTGATGAATGATGAGGCCAATTCCCATTATTTTGCTATAATTGAACAGATAGCAGAAGGAAATATGTGGTTGAATGACACCATTGGGTTTGTTCCAAAAAATTCTTGGGCCATAGATCCATTTGGATACTCGTCTACCATGGCATATCTTCTGCGTCGCATGGGTTTTGACAACATGCTTATTCAGAGGACCCATTACGAGCTGAAGAAGGAGCTTGCGTGGCATAAAAATTTAGAATACATATGGCGTCAAAGCTGGGATGCAGAGGAAACCACTGATATATTTGTCCATATGATGCCCTTTTATTCGTATGATATACCTCATACATGTGGCCCAGAGCCTGCTATTTGTTGTCAGTTTGATTTTGCACGCATGTCGGGTTTTGCTTATGAACAATGCCCATGGGGGCAGTATCCTGTGGAGACCACTCAGGAAAATGTTCAGGAAAGAGCTCTTAAATTACTGGATCAGTACAAGAAAAAGTCAACTTTGTACCGAACCAATACTCTTCTTGTTCCTCTTGGAGATGATTTTCGATATATTAATGTCGAAGAAGCAGAAGCCCAATTCAGAAATTACCAAATGCTGTTTGATTATATCAATTCAAACCCCAGTTTGAATGCAGAGGCCAAGTTTGGTACTTTGGAAGATTACTTTGTAACCCTGCGTGAGGAAGCAGAGAGAATAAATTACTCATCTCCTGGTGAAATAGGATCCGGTCTAGTTGAAGGTTTTCCTTCTCTATCCGGTGACTTTTTTACTTATGCTGATCGGCAACAAGACTACTGGAGTGGTTATTATGTTTCACGACCCTTCTTCAAGGCTGTTGATAGGGTACTAGAACAGACACTTCGTGCCACTGAAATGATGGTAGCTCTAATACTTGGCACCTGTCGGAGATCATATTGTGAAAAGTTCGCAATGGGGTTTTCTTATAAGTTGACAGCTGCTAGAAGGAACTTGGCTCTTTTTCAGCATCATGATGGGGTGACTGGTACTGCAAAAGATCATGTGGTTATGGACTATGGAATGCGCATGCATACTTCATTACTGGACTTGCAAATTTTTATGTCCAAGGCAGTTGAGGCACTTCTTGGAATCCGCTATGATAAACTAGACCACAGTCCTGCCCAGTTTGAGCCAGCAATAGTGAGATCTAAATATGATGCCCAACCATTGCATAAAGTGATTAGTGTTCATGAGGGTTCTTACGAATCAGTGGCCTTTTTTAATCCTTTGGAGCAAACCAGAGAAGAAGTTGTAATGGTTGTTGTTGACAGTCCTTATGTTACAGTTGTTGATTCTAACTGGACTTGCGTTCAGAGCCAGATTTTGCCCGAGTTGCAGTATCATAGTAGCAAGATCTTTACTGGGAAGCATCGACTTTACTGGAAAGTTTCTGTTCCTGCAATGGGATTGGAAACTTATTATATTTCCACTAGCTTTGGTGAGTGTGAAAAGGCCAGGCCTGCAAAGTTGAAAATGTTCTCTAAGTCTAGCTCGGTTGCTTGTCCAACACCCTATTCTTGTGTGGAAGTAGAGGCTGATGTGACTGAAATTGAGAATCAGCATCAAAAACTAACTTTTGATGTAAAGTACGGTTTGTTGCAGAAGATTATCTCTAGTTCCCCAAATACTATAAATGAGGAAATTGGTATGTATTCTAGTTCTGGTGGGGCATACTTGTTCATGCCCCACGGCGATGCCCAGCCCATTATTGAAGAAGGTGGGCAGTTGTTGGTGTCAGAGGGTCCTTTGATGCAGGAAGTATACTCTTATCCAAGGACAGCTTGGGATAAATCCCCCATTTCTCATAGCACCCGAATATATAGTGGAGAGAGTACAGTGCAAGGGTTTGCCATTGAAAAGGAATATCATGTTGAACTTCTTGGCCGTGATTTCAATGATAGGGAATTGATAGTTAGATATAAAACAGATATTGATAACAAGAAGATTTTTTACTCAGATTTAAATGGATTTCAGATGAGCCGAAGAGAAACTTACGATAAGATTCCTCTGCAAGGCAATTACTACCCCATGCCCTATCTAGCATTCATACAAGGATCAAATGGTCAGCGATTTTCTGTCCATTCCCGGCAATCATTAGGTGTGGCTAGCCTTAAAAATGGATGGCTAGAGATAATGCTAGACCGCCGGTTGGTAAGAGATGACGGTCGTGGTCTGGGACAAGGAGTGATGGATAACCGTGTGATGAATGTTGTCTTCCACCTAACCATGGAAGCCAATGTTTCTGCAACATCAAATTTGGTTCCCACACCTTTTCCTTACAGCCCTTCTCTTTTATCTCACCGAGTTGGTTCTCACTTGAACTATCCAATACATGCATTTGTTTCCAAGAAACCGCAGGATATGTCTGTGAAGCCACCGCCTAGATCCTTTTCTCCTCTTGCCACCCCCTTACCGTGCGATTTGCACATAGTGAACTTCAAGGTTCCCAAGCCCTTAAAGTTTTTGCAGCAACCACCTGAAGGTCCTAGATTCGGGCTAATTTTGCACAGGCGACATTGGGATTCTTCGTACTGCCGGAAGGGAAGATCACAATGCACTAATCTGGCCGACAACACCGTGAATCTGTTCAGCATGTTCAAGGAACTTACAGTCTCGAAGGCTAAAGCAACTTCCCTTAATCTCTTGCACGAAGACCCTGAAGTAATGGGATTCTCAGAGCAGTTTGGAGATCTTGCAAAAGAGGGGAATGTAGCCATATCTCCAATGGAAATACAAGCCTACAGATTGGAATTGAGGCCACAACCACAATAG
Predicted protein sequences of Glyma19g01890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01890.1 sequence type=predicted peptide gene model=Glyma19g01890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPFSSSRRGTSWSSSILPSSNPHKSKAPRKGRKRALVKDFIFSNFFAIGLVLSLSLFLLILLRSGVPKPLSTRFRATTRPSRSRKTVIRKPLPTGANLSTLAGAAVDVTTKALYDKIEFLDVDGGAWKQGWSVTYRGNEWDSEKLKVFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVQTLSKDSRRKFIWEEMSYLERWWRDASDEMKESFINLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIAEGNMWLNDTIGFVPKNSWAIDPFGYSSTMAYLLRRMGFDNMLIQRTHYELKKELAWHKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMSGFAYEQCPWGQYPVETTQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYINVEEAEAQFRNYQMLFDYINSNPSLNAEAKFGTLEDYFVTLREEAERINYSSPGEIGSGLVEGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALILGTCRRSYCEKFAMGFSYKLTAARRNLALFQHHDGVTGTAKDHVVMDYGMRMHTSLLDLQIFMSKAVEALLGIRYDKLDHSPAQFEPAIVRSKYDAQPLHKVISVHEGSYESVAFFNPLEQTREEVVMVVVDSPYVTVVDSNWTCVQSQILPELQYHSSKIFTGKHRLYWKVSVPAMGLETYYISTSFGECEKARPAKLKMFSKSSSVACPTPYSCVEVEADVTEIENQHQKLTFDVKYGLLQKIISSSPNTINEEIGMYSSSGGAYLFMPHGDAQPIIEEGGQLLVSEGPLMQEVYSYPRTAWDKSPISHSTRIYSGESTVQGFAIEKEYHVELLGRDFNDRELIVRYKTDIDNKKIFYSDLNGFQMSRRETYDKIPLQGNYYPMPYLAFIQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVRDDGRGLGQGVMDNRVMNVVFHLTMEANVSATSNLVPTPFPYSPSLLSHRVGSHLNYPIHAFVSKKPQDMSVKPPPRSFSPLATPLPCDLHIVNFKVPKPLKFLQQPPEGPRFGLILHRRHWDSSYCRKGRSQCTNLADNTVNLFSMFKELTVSKAKATSLNLLHEDPEVMGFSEQFGDLAKEGNVAISPMEIQAYRLELRPQPQ*