Report for Sequence Feature Glyma19g01870
Feature Type: gene_model
Chromosome: Gm19
Start: 1492820
stop: 1495870
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G14450 AT
Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH=389
SoyBase E_val: 4.00E-108 ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0016788 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds
SoyBase N/A ISS
PTHR22835 Panther
ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN
JGI ISS
PTHR22835:SF39 Panther
LATERAL SIGNALING TARGET PROTEIN 2
JGI ISS
PF00657 PFAM
GDSL-like Lipase/Acylhydrolase
JGI ISS
UniRef100_D2DWB3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Carboxilic ester hydrolase n=1 Tax=Phaseolus vulgaris RepID=D2DWB3_PHAVU
SoyBase E_val: 1.00E-149 ISS
UniRef100_UPI000233F325 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F325 related cluster n=1 Tax=unknown RepID=UPI000233F325
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g01870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma19g01870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma19g01870
Coding sequences of Glyma19g01870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01870.2 sequence type=CDS gene model=Glyma19g01870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATTTAAGAGAGTGAGTTACATGGTTGGGTGTTTTGTTTTTGCTTTGGTAGGTTTATTCAAGGAAGCAACAAGGGGAGAAGATGTTCTGCATAAATCCAAAGAATACTCAGCAATTTACAATTTTGGGGACTCAAATTCAGACACAGGAACATTTTCTGCTGCATTTACAATGGTTTATCCTCCCAATGGTGAAAGCTTTCCTAGAAATCATCTCCCTACAAGGAACTGTGATGGTCGTCTCATCATAGATTTCATTAGTAAGAACAAACAAAATATTCTATACCATCAAGTAGTGGACACGGCTGAAGAGTTGAAGCTGCCATACTTGAGTGCATATTTGGATTCCATTGGTTCAAATTACAATTATGGGGCAAACTTTGCAGCTGGTGGTTCATCCATACGACCCACGGGCTTTAGTCCAGTCTTCTTTGGGCTTCAAATATCTCAATTCACACAGTTCAAGTCCAGGACAATGGCTCTCTATAATCAAAGCTCTCACAACAGAGAAGATGCACCTTTCAAAAGCAGGCTTCCCAAGTCCATGGACTTCTCCAATGCCCTATACACCATAGATATTGGTCAGAACGATCTAAGCTTTGGTTTCATGTCCTCAGATCCACAATCTGTCAGATCAACAATCCCTGATATATTGAGCCAATTCTCTCAAGGATTACAAAAACTTTACAATGAAGGGGCTAGATTCTTTTGGATACATAATACAGGCCCAATTGGATGTTTGCCACGAGCAAGTGTGGAGAACAAGCCCAGACCTGAAGACTTGGATTCTACTGGATGTAGAAAAATGGAGAATGAGATTGCTCAGGAGTTTAACAAGCAGCTTAAGGACATTGTGTTTGAGCTAAGGAAAAAGTTACCTACGGCCAAGTTCACCAATGTTGATGTCTACTCAGCCAAATATGAACTGATAAAAAATGCAAGGAATCAAGGTTTTATTAATCCAAAGAAGTTCTGCTGTGGCACAACCAATGTTATCCATGTTGATTGTGGTAAAAAGAAAATTAATAAAAATGGAAAAGAAGAATACTACAAATGTAAACATCCATCAAAGTACATTAGCTGGGACGGGGTGCACTACTCTGAAGCAGCAAACCGATGGCTTGCCACGCTCATTTTGAATGGCTCTTTCTCTGATCCACCAATTGCTATAGGGATGATTGGTAATTAA
Predicted protein sequences of Glyma19g01870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01870.2 sequence type=predicted peptide gene model=Glyma19g01870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFKRVSYMVGCFVFALVGLFKEATRGEDVLHKSKEYSAIYNFGDSNSDTGTFSAAFTMVYPPNGESFPRNHLPTRNCDGRLIIDFISKNKQNILYHQVVDTAEELKLPYLSAYLDSIGSNYNYGANFAAGGSSIRPTGFSPVFFGLQISQFTQFKSRTMALYNQSSHNREDAPFKSRLPKSMDFSNALYTIDIGQNDLSFGFMSSDPQSVRSTIPDILSQFSQGLQKLYNEGARFFWIHNTGPIGCLPRASVENKPRPEDLDSTGCRKMENEIAQEFNKQLKDIVFELRKKLPTAKFTNVDVYSAKYELIKNARNQGFINPKKFCCGTTNVIHVDCGKKKINKNGKEEYYKCKHPSKYISWDGVHYSEAANRWLATLILNGSFSDPPIAIGMIGN*