SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14450 | AT | Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH=389 | SoyBase | E_val: 4.00E-108 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| PTHR22835 | Panther | ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR22835:SF39 | Panther | LATERAL SIGNALING TARGET PROTEIN 2 | JGI | ISS | |
| PF00657 | PFAM | GDSL-like Lipase/Acylhydrolase | JGI | ISS | |
| UniRef100_D2DWB3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carboxilic ester hydrolase n=1 Tax=Phaseolus vulgaris RepID=D2DWB3_PHAVU | SoyBase | E_val: 1.00E-149 | ISS |
| UniRef100_UPI000233F325 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F325 related cluster n=1 Tax=unknown RepID=UPI000233F325 | SoyBase | E_val: 0 | ISS |
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Glyma19g01870 not represented in the dataset |
Glyma19g01870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01870.2 sequence type=CDS gene model=Glyma19g01870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTTAAGAGAGTGAGTTACATGGTTGGGTGTTTTGTTTTTGCTTTGGTAGGTTTATTCAAGGAAGCAACAAGGGGAGAAGATGTTCTGCATAAATCCAAAGAATACTCAGCAATTTACAATTTTGGGGACTCAAATTCAGACACAGGAACATTTTCTGCTGCATTTACAATGGTTTATCCTCCCAATGGTGAAAGCTTTCCTAGAAATCATCTCCCTACAAGGAACTGTGATGGTCGTCTCATCATAGATTTCATTAGTAAGAACAAACAAAATATTCTATACCATCAAGTAGTGGACACGGCTGAAGAGTTGAAGCTGCCATACTTGAGTGCATATTTGGATTCCATTGGTTCAAATTACAATTATGGGGCAAACTTTGCAGCTGGTGGTTCATCCATACGACCCACGGGCTTTAGTCCAGTCTTCTTTGGGCTTCAAATATCTCAATTCACACAGTTCAAGTCCAGGACAATGGCTCTCTATAATCAAAGCTCTCACAACAGAGAAGATGCACCTTTCAAAAGCAGGCTTCCCAAGTCCATGGACTTCTCCAATGCCCTATACACCATAGATATTGGTCAGAACGATCTAAGCTTTGGTTTCATGTCCTCAGATCCACAATCTGTCAGATCAACAATCCCTGATATATTGAGCCAATTCTCTCAAGGATTACAAAAACTTTACAATGAAGGGGCTAGATTCTTTTGGATACATAATACAGGCCCAATTGGATGTTTGCCACGAGCAAGTGTGGAGAACAAGCCCAGACCTGAAGACTTGGATTCTACTGGATGTAGAAAAATGGAGAATGAGATTGCTCAGGAGTTTAACAAGCAGCTTAAGGACATTGTGTTTGAGCTAAGGAAAAAGTTACCTACGGCCAAGTTCACCAATGTTGATGTCTACTCAGCCAAATATGAACTGATAAAAAATGCAAGGAATCAAGGTTTTATTAATCCAAAGAAGTTCTGCTGTGGCACAACCAATGTTATCCATGTTGATTGTGGTAAAAAGAAAATTAATAAAAATGGAAAAGAAGAATACTACAAATGTAAACATCCATCAAAGTACATTAGCTGGGACGGGGTGCACTACTCTGAAGCAGCAAACCGATGGCTTGCCACGCTCATTTTGAATGGCTCTTTCTCTGATCCACCAATTGCTATAGGGATGATTGGTAATTAA
>Glyma19g01870.2 sequence type=predicted peptide gene model=Glyma19g01870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFKRVSYMVGCFVFALVGLFKEATRGEDVLHKSKEYSAIYNFGDSNSDTGTFSAAFTMVYPPNGESFPRNHLPTRNCDGRLIIDFISKNKQNILYHQVVDTAEELKLPYLSAYLDSIGSNYNYGANFAAGGSSIRPTGFSPVFFGLQISQFTQFKSRTMALYNQSSHNREDAPFKSRLPKSMDFSNALYTIDIGQNDLSFGFMSSDPQSVRSTIPDILSQFSQGLQKLYNEGARFFWIHNTGPIGCLPRASVENKPRPEDLDSTGCRKMENEIAQEFNKQLKDIVFELRKKLPTAKFTNVDVYSAKYELIKNARNQGFINPKKFCCGTTNVIHVDCGKKKINKNGKEEYYKCKHPSKYISWDGVHYSEAANRWLATLILNGSFSDPPIAIGMIGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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