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Report for Sequence Feature Glyma19g01840

Feature Type:gene_model
Chromosome:Gm19
Start:1428049
stop:1430824
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g01840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31970AT Annotation by Michelle Graham. TAIR10: cytochrome P450, family 82, subfamily C, polypeptide 2 | chr4:15462408-15464358 FORWARD LENGTH=523 SoyBaseE_val: 4.00E-168ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071456GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004497GO-mf Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PTHR24298:SF44Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_I1N5Y8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5Y8_SOYBN SoyBaseE_val: 0ISS
UniRef100_O49859UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 82A4 n=1 Tax=Glycine max RepID=C82A4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g01840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01840
ParalogEvidenceComments
Glyma13g04710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g015200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g01840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g01840
>Glyma19g01840.1   sequence type=CDS   gene model=Glyma19g01840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATACACAGCATTATTGCACATCTCTGTAGAAGCAGCCACTATAGTAAACAATCTTCTCTATTTAAAATGGAGTTTGTTCTAAATTACCTAAATGCCACTGCCATTGGAGTTCTTTCTATAACCCTCTTCTTTTTGTTTTTGTATAATCCCTTCAAATTTGCATTAGGTAAAAAAGAGGCTCCCAAAGTTGCAGGTGCATGGCCAATACTTGGTCACCTACCACTATTGAGTGGTTCAGAGACACCTGATAGGGTTTTGGGTGCTTTGGCTGATAAGTATGGACCCATATTCACCATCAACTATGGTGTCAAAAAGGCTTTGGTAATCAGCAACTGGGAAATTGCTAAGGAATGCTTCACCAAAAACGACATCGTCGTTTCGTCTCGCCCCAAGCTTCTTGCCATTGAACTCATGTGCTACAACCAAGCCATGTTTGGGTTTGCACCCTATGGTCCTTATTGGCGCGAGCAAAGAAAGATTACAACGTTAGAGATCCTTACATCTCGCAGAGTGGAGCAACTACAGCATGTTCGTGTCTCCGAAGTTCAAAGTTCGATCAAAGAGCTCTTCAATGTTTGGTCAAGCAACAAGAATAATGAGTCTGGCTATGCGTTGCTGGAGCTGAAGCAATGGTTTTCTCAATTGACATACAACATGGTTCTTCGAATGGTCGTCGGAAAGCGACTTTTCGGTGCTAGAACTATGGATGATGAGAAGGCTCAGAGATGTGTGGAGGCTGTGAAGGAGTTCATGCGTCTGATGGGGGTGTTCACGGTGGCAGATGCTATTCCTTTCTTGAGATGGTTTGATTTTGGTGGCTATGAGAAGGCCATGAAGGAAACTGCCAAGGATTTGGATGAGATTTTTGGTGAGTGGTTAGAGGAGCACAAACAAAATAGGGCTTTTGGTGAGAACAACGTTGATGGAATTCAAGACTTCGTGGACGCCATGCTTTCCTTGTTTGATGGAAAAACAATTCATGGCATAGATGCGGATACCATCATCAAATCCAATTTACTGACAGTAATTTCAGGAGGAACTGAATCAATCACTAATACTCTTACATGGGCAGTATGTTTGATATTGAGAAATCCTATTGTATTGGAAAAAGTTATAGCAGAACTTGACTTCCAAGTTGGAAAAGAGAGATGTATAACTGAGTCTGATATAAGTAAGTTAACATACCTTCAAGCTGTGGTCAAAGAAACTTTAAGATTATACCCTTCAGTTCCTCTCTCATCACCTCGTGAATTCATAGAGGATTGCACTTTAGGTGGCTACAATGTCAAAAAAGGAACTCGTCTAATTACAAATATTTGGAAGATCCACACAGATCTTAGTGTTTGGTCAAATCCATTAGAGTTCAAACCAGAAAGGTTTCTAACCACCCATAAAGACATTGATGTTAGGGGACATCATTTTGAGCTATTACCATTTGGTGGTGGTAGAAGAGTGTGTCCTGGAATATCCTTTAGCCTTCAAATGGTTCATTTGATTCTTGCCAGTCTTTTTCATTCTTTTTCATTCTTAAATCCATCAAATGAACCTATTGATATGACTGAAACCGTTGGATTAGGCAAGACTAAAGCTACTCCACTTGAGATTTTAATTAAGCCACGATTATCTTCTAATTGTTATCTATGA
Predicted protein sequences of Glyma19g01840
>Glyma19g01840.1   sequence type=predicted peptide   gene model=Glyma19g01840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIHSIIAHLCRSSHYSKQSSLFKMEFVLNYLNATAIGVLSITLFFLFLYNPFKFALGKKEAPKVAGAWPILGHLPLLSGSETPDRVLGALADKYGPIFTINYGVKKALVISNWEIAKECFTKNDIVVSSRPKLLAIELMCYNQAMFGFAPYGPYWREQRKITTLEILTSRRVEQLQHVRVSEVQSSIKELFNVWSSNKNNESGYALLELKQWFSQLTYNMVLRMVVGKRLFGARTMDDEKAQRCVEAVKEFMRLMGVFTVADAIPFLRWFDFGGYEKAMKETAKDLDEIFGEWLEEHKQNRAFGENNVDGIQDFVDAMLSLFDGKTIHGIDADTIIKSNLLTVISGGTESITNTLTWAVCLILRNPIVLEKVIAELDFQVGKERCITESDISKLTYLQAVVKETLRLYPSVPLSSPREFIEDCTLGGYNVKKGTRLITNIWKIHTDLSVWSNPLEFKPERFLTTHKDIDVRGHHFELLPFGGGRRVCPGISFSLQMVHLILASLFHSFSFLNPSNEPIDMTETVGLGKTKATPLEILIKPRLSSNCYL*






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