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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma19g01821

Feature Type:gene_model
Chromosome:Gm19
Start:1395712
stop:1396518
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g01821
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23440AT Annotation by Michelle Graham. TAIR10: Peptidase C15, pyroglutamyl peptidase I-like | chr1:8321940-8322224 FORWARD LENGTH=94 SoyBaseE_val: 3.00E-25ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0046482GO-bp Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
PTHR13856Panther VHS DOMAIN CONTAINING PROTEIN FAMILY JGI ISS
PTHR13856:SF27Panther TARGET OF MYB1 RELATED (TOM1 - RELATED) JGI ISS
PF00790PFAM VHS domain JGI ISS
UniRef100_G7IAA6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pyrrolidone-carboxylate peptidase n=1 Tax=Medicago truncatula RepID=G7IAA6_MEDTR SoyBaseE_val: 6.00E-37ISS
UniRef100_UPI000233F323UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F323 related cluster n=1 Tax=unknown RepID=UPI000233F323 SoyBaseE_val: 7.00E-71ISS

Expression Patterns of Glyma19g01821
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01821 not represented in the dataset
Glyma19g01821 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g01821 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g014900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g01821
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g01821
>Glyma19g01821.1   sequence type=CDS   gene model=Glyma19g01821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAATTCCATGGTGGAACGCGCCACGGGCGACATGCTCATAGGGCCTGATTGGGCCATGAACATCAAGATCTGCGACATGCTCAATCATGACCCTGGTTGTTATGTTTTTACTACAACAACGACAACAATTCATGTGACAGGATTTAAGAAATTGCATGGAGTTTCAAAGAATCCAACAGAGACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGGGATTAGTTATTGGGAGCTCCAGCATTCTTGAGATTGCTGGTCAAGGAGCACTTGTGCCATTGTACCAGAGATTACAATCCAGCGTTATTGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGGTGAGTTGCCCCTGTACTTGA
Predicted protein sequences of Glyma19g01821
>Glyma19g01821.1   sequence type=predicted peptide   gene model=Glyma19g01821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNSMVERATGDMLIGPDWAMNIKICDMLNHDPGCYVFTTTTTTIHVTGFKKLHGVSKNPTETIANNLTEYMNKKGLPKGLVIGSSSILEIAGQGALVPLYQRLQSSVIAKDSESSNSNKIIWVSCPCT*






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