|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G59970 | AT | Annotation by Michelle Graham. TAIR10: Matrixin family protein | chr1:22073601-22074683 FORWARD LENGTH=360 | SoyBase | E_val: 9.00E-64 | ISS |
GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0031012 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular matrix | SoyBase | N/A | ISS |
GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
GO:0008237 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
PTHR10201 | Panther | MATRIX METALLOPROTEINASE | JGI | ISS | |
PTHR10201:SF15 | Panther | MATRIX METALLOPROTEINASE-RELATED | JGI | ISS | |
PF00413 | PFAM | Matrixin | JGI | ISS | |
PF01471 | PFAM | Putative peptidoglycan binding domain | JGI | ISS | |
UniRef100_G7KJD9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Interstitial collagenase n=1 Tax=Medicago truncatula RepID=G7KJD9_MEDTR | SoyBase | E_val: 2.00E-80 | ISS |
UniRef100_I1N5Y2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N5Y2_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma19g01740 not represented in the dataset |
Glyma19g01740 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.19g014400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01740.1 sequence type=CDS gene model=Glyma19g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTTAATCTTCTAAATCTTTCAATCTTGTTCTTTTTACTCTTTATTGTGAATCCATTTCCCTTTGTCGAGCCAAGAGCCTTACAATTACCTGTGTTCACCAAAACTCTCCAAAACCTCAGGGGCGTTCACAAGGGACAAAAGGCGAACGGTGTGGGAGAACTCAGAAGCTACCTCCAACATTTTGGCTACCTAACAAACGGTGATTCTTCGAACGACAACTTCGACAATAATGTCGAGTCTGCTCTCAAACACTACCAAGAGTTCAATCACTTACGTTCCACTGGTGTGGTAGATGACGAAACTATCAAAAGAATGAGCCTCCCACGTTGTGGAATGCCTGATATTGTCACCCAACCTAACGCTAACCAGTTGTTGGTGGCCCCTAACAACTACAGCTTCTTCCCGGGGCAACCTAAATGGAGAAAATTTGCACTAACCTATGGACACATGTCAAGTGTTGTCTTGTCCAATAACTTCTTCAGCTCTGTGAGGGCAGCAAAATTGAGAGCCTTGCAAACATGGGCTAGAGTCACCAACTTCACGTTTACAGAAAGGGCCCCACCAGCTGACATAGTCTATGGGTTCCATCGTGGGGACCACGGTGATGGCTACCCATTTGACGGGCCGTATGGGGTGCTAGCCCATGCTTTTGCGCCACAAAATGGGAGGTGCCACTATGATGCAGATGAACCATGGGATTTTAATGGGCAAAACATTGATTTTGAAACAGTAGCTTTGCATGAATGTGGTCACCTTTTAGGGCTTGGACATAGTAATACTCGGGGTTCGGTTATGGAAGCCACTTATGCAGGGCAAAGGAGGAGTTTAACGCAGGATGATATTGATGGCATACGAGCTCTATATCAGTTCTAG
>Glyma19g01740.1 sequence type=predicted peptide gene model=Glyma19g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALNLLNLSILFFLLFIVNPFPFVEPRALQLPVFTKTLQNLRGVHKGQKANGVGELRSYLQHFGYLTNGDSSNDNFDNNVESALKHYQEFNHLRSTGVVDDETIKRMSLPRCGMPDIVTQPNANQLLVAPNNYSFFPGQPKWRKFALTYGHMSSVVLSNNFFSSVRAAKLRALQTWARVTNFTFTERAPPADIVYGFHRGDHGDGYPFDGPYGVLAHAFAPQNGRCHYDADEPWDFNGQNIDFETVALHECGHLLGLGHSNTRGSVMEATYAGQRRSLTQDDIDGIRALYQF*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||