Report for Sequence Feature Glyma19g01700
Feature Type: gene_model
Chromosome: Gm19
Start: 1279993
stop: 1287622
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01370 AT
Annotation by Michelle Graham. TAIR10: CRM family member 2 | chr3:139033-143477 FORWARD LENGTH=1011
SoyBase E_val: 0 ISS
GO:0000372 GO-bp
Annotation by Michelle Graham. GO Biological Process: Group I intron splicing
SoyBase N/A ISS
GO:0000373 GO-bp
Annotation by Michelle Graham. GO Biological Process: Group II intron splicing
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
KOG1990
KOG
Poly(A)-specific exoribonuclease PARN
JGI ISS
PF01985 PFAM
CRS1 / YhbY (CRM) domain
JGI ISS
UniRef100_G7KJD3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chloroplastic group IIA intron splicing facilitator CRS1 n=1 Tax=Medicago truncatula RepID=G7KJD3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233F31E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F31E related cluster n=1 Tax=unknown RepID=UPI000233F31E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g01700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma19g01700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g014000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g01700
Coding sequences of Glyma19g01700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01700.1 sequence type=CDS gene model=Glyma19g01700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTGCTTCCTGCAACTCACTTTCACTACTTCCACACCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATTGCACATTTTCCCTCTTCAATTCCCCAAACCCAAACCCAAATTCCTCATTCGCTGCTCCGACACAGAAACCCTCCCGGACTCCGCCATTCAGCGAATCGCCGACAAGCTCCGCAGCCTCGGCATCGCCGACCAACCCTCCACCGCCACTCCTGGTCCCTCCGACTCCGATGCCGGTGAAATCTTCGTTCCCCTTCCGCAGCAACTCCCGACGCGGCGCGTGGGGCACACGATCGACCCGACCTGGGCGAAGCGGGAGAGGCGAGAGGACAAGGTTCCGACGCTGGCAGAGCTGAGCCTCTCGGATGCCGAGATTCGGCGGCTCACGACGGCTGGGCTGGCGATGAGGCAGAAGCTGCGTGTCGGGAAGGCGGGACTCACGGAAGGGATCGTGAACGGGATTCACGAACGGTGGAGGAGTTTCGAGGTGGTGAGGATTGTGTGTGAGGATCTCTCTAGGTTTAACATGAAAAGGACTCATGACTTGTTGGAGAGAAAAACTGGAGGCCTTGTTGTTTGGAGATCTGGAAGTAAGATAATATTATACAGAGGGACTGATTATAAGTACCCTTACTTCCTATCTGATAAAGTGTCGAGAGATGACAACACTGGTGATGCTATGCAACATATGGATGAGGATGCTAAAAATTTTGATAAAAGAGAGAGTCACTCGTCTGAAAAGAATTCAGTGACATATGCTGGGAAAAGTTCAAATGTCAAAACAGCAAAACCAGCTTTGATACAAGGTGTTGGGAGTCCCAATAAAGTACGATTTCAACTGCCAGGTGAGGCAGAACTTGCAAAAGATGCAGACAGCTTGTTAACAGGTATCGGGCCACGATTCATTGATTGGTGGGGATATGACCCTCTGCCTGTTGACGCTGATCTTCTACCAGCTGTTATTCCTGGATATAGGAAGCCATTTCGCCTTCTTCCTTATGGTGTGAAGCCTAAACTAACAGATGATGAAATGACCACAATGAGGAGACTTGGCAAACATTTACCATGTCATTTTGCATTAGGTAGAAATAAAAAACTTCATGGATTGGCTGCTGCAATTATTAAGCTTTGGGAAAGATGTGAGATTGTCAAGATTGCCATAAAGAGAGGTGTGCTGAATACTAATGGCGAGTTGATGGCTGAAGAGATAAAGTATCTGACTGGAGGTACTCTCATTGCTCGGGATAAAGAATTCATCGTTTTCTACAGAGGAAAAGACTTCTTGCCAACTGCAGTGTCATCCGCAATTGAACAGCGAAGGAGTATTGGAATGTACAAACTGAAGACTAGAAACAGTTTGTCAGTTACAGACGATCCAGACCTGAAAGATGGAACCATAGAGTGTGATTCTGAAGTCAAGGGTATGAACTTCAAGAAAGATACTAAACAAGGAATGTTGACTGAGGCTGAGGCAGCTATTAAAAGCACTAGCATCAAATTGTCAATGGCACTAGAAGAGAAAGCAAAGGCTGAAAAACTTCTATCGGAGCTGGAAAATGCAGAGAGCCCCCAAGAAGAAGAAATCAATAAAGAGGGTATTACTGAAGAAGAGAAATACATGTTGCGGAGGATTGGCTTGAAGATGAGTCCCTTCCTGTTACTAGGTAGACGAGGGGTTTTTGATGGAACGGTGGAAAATATGCATCTTCATTGGAAGTATCGGGAACTTGTGAAGATAATATGTAATAAACAGATGAGCCTGGAAGATGTCCAACAGATAGCTCAAACCTTAGAGGCAGAAAGTGGCGGAATATTAATTGCAGTAGAAAGAGTGAACAAGAGCTATGCAATCATTGTGTATCGTGGAAAGAATTATAGTCGGCCTGCAAGTTTAAGGCCTCGTACACTTTTAAATAAAAAACAAGCATTGAAGCGCTCTATAGAAGCACAGCGCTGTGAGTCATTGAAGCTCCATGTTTTGAAACTAGATAGGAACATAAACGAATTGAAACATCAAATGGCTAAAGATATGGAGGCAAACAGTAAGCAGACTTCTGTTGACAATCAACAAGCAATACAGGAACAGCCAGTTGAGCTGATTGATAGTGGTGGAGCACATCAAGCTGAACCAGGAAATTCCATTAATTGGAATTATCCTAAAGAAGCTTCGGTTGACTATCAACAAACAATGCAGGAGCAATCAGTTGAGCTGTTTGATGGTGGTGGAGCTGTTCAAAGTGAACCACAAAACTCCATAAATTGGAACTCTCCCAAAGAAGCTTCTGTCGATAATCAACAGGCAATACAGGGGCAGTCATTTGAGCTCATTGATAGAAGTGAAGCTCATCATGGTGAACCAGAAAATTCCATAGATTGGAATTCTCCTGAAGAAGCTTCTGTTGACAATCAACAAGCTATACAAGGGCAGCCAGTTGAGCTGATTGATGGTGGTGGAGCTCATCAAGATGAACCAGAATCTTGGTCTGGTTTGATTCCTAAAGAAACAAAGTTGGACAGAGACAGTGATTCTGTTGTTGATACTCAGCATTGCGTCTCTATTAGCAAGGTAATGGAATCATCAATCGTAGCATCAGAGAGTGATCCTGACCTATCAGCTCTGGTGAGAGATATGAGTTCCAACGAGTTGCCTTCTAGATCTGTATATCTTTCCAATAGAGAAAGACTTCTTCTACGAAAGCAGGCATTAAAGATGAAAAAGCGGCCTGTCCTTTCCGTAGGAAAGAGCAACATTGTAACTGGTCTTGCGAAAGCAATCAAAGCTCACTTCCAGAAGCACCCTCTTGCCATAGTTAATGTCAAAGGAAGGGCAAAAGGGACCTCAATTCAGGAGGTGGTGTCCAAGCTAGAGCAAGAAACTGGTGCCGTTCTAGTCTCTCAAGAACTCAACAAAGTCATACTGTACAGGGGTTGGGGGGAAGGAGAGAAACCTAGCACTGCAATAAATTTTGATAAAGTGGGTAAAGAGGTAGCGGCAAAGCCTGGCGTCTCTCCTGAACTCTTGGAAGCAATCAGAGTTGAATGTGGATTGCAGTAA
Predicted protein sequences of Glyma19g01700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01700.1 sequence type=predicted peptide gene model=Glyma19g01700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLLPATHFHYFHTFPSSSSSSSSSSSSSSTLHIFPLQFPKPKPKFLIRCSDTETLPDSAIQRIADKLRSLGIADQPSTATPGPSDSDAGEIFVPLPQQLPTRRVGHTIDPTWAKRERREDKVPTLAELSLSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDNTGDAMQHMDEDAKNFDKRESHSSEKNSVTYAGKSSNVKTAKPALIQGVGSPNKVRFQLPGEAELAKDADSLLTGIGPRFIDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLNTNGELMAEEIKYLTGGTLIARDKEFIVFYRGKDFLPTAVSSAIEQRRSIGMYKLKTRNSLSVTDDPDLKDGTIECDSEVKGMNFKKDTKQGMLTEAEAAIKSTSIKLSMALEEKAKAEKLLSELENAESPQEEEINKEGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNYSRPASLRPRTLLNKKQALKRSIEAQRCESLKLHVLKLDRNINELKHQMAKDMEANSKQTSVDNQQAIQEQPVELIDSGGAHQAEPGNSINWNYPKEASVDYQQTMQEQSVELFDGGGAVQSEPQNSINWNSPKEASVDNQQAIQGQSFELIDRSEAHHGEPENSIDWNSPEEASVDNQQAIQGQPVELIDGGGAHQDEPESWSGLIPKETKLDRDSDSVVDTQHCVSISKVMESSIVASESDPDLSALVRDMSSNELPSRSVYLSNRERLLLRKQALKMKKRPVLSVGKSNIVTGLAKAIKAHFQKHPLAIVNVKGRAKGTSIQEVVSKLEQETGAVLVSQELNKVILYRGWGEGEKPSTAINFDKVGKEVAAKPGVSPELLEAIRVECGLQ*