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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g01700

Feature Type:gene_model
Chromosome:Gm19
Start:1279993
stop:1287622
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01370AT Annotation by Michelle Graham. TAIR10: CRM family member 2 | chr3:139033-143477 FORWARD LENGTH=1011 SoyBaseE_val: 0ISS
GO:0000372GO-bp Annotation by Michelle Graham. GO Biological Process: Group I intron splicing SoyBaseN/AISS
GO:0000373GO-bp Annotation by Michelle Graham. GO Biological Process: Group II intron splicing SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG1990 KOG Poly(A)-specific exoribonuclease PARN JGI ISS
PF01985PFAM CRS1 / YhbY (CRM) domain JGI ISS
UniRef100_G7KJD3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chloroplastic group IIA intron splicing facilitator CRS1 n=1 Tax=Medicago truncatula RepID=G7KJD3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F31EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F31E related cluster n=1 Tax=unknown RepID=UPI000233F31E SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01700 not represented in the dataset

Glyma19g01700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g014000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01700.1   sequence type=CDS   gene model=Glyma19g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCTTCCTGCAACTCACTTTCACTACTTCCACACCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATTGCACATTTTCCCTCTTCAATTCCCCAAACCCAAACCCAAATTCCTCATTCGCTGCTCCGACACAGAAACCCTCCCGGACTCCGCCATTCAGCGAATCGCCGACAAGCTCCGCAGCCTCGGCATCGCCGACCAACCCTCCACCGCCACTCCTGGTCCCTCCGACTCCGATGCCGGTGAAATCTTCGTTCCCCTTCCGCAGCAACTCCCGACGCGGCGCGTGGGGCACACGATCGACCCGACCTGGGCGAAGCGGGAGAGGCGAGAGGACAAGGTTCCGACGCTGGCAGAGCTGAGCCTCTCGGATGCCGAGATTCGGCGGCTCACGACGGCTGGGCTGGCGATGAGGCAGAAGCTGCGTGTCGGGAAGGCGGGACTCACGGAAGGGATCGTGAACGGGATTCACGAACGGTGGAGGAGTTTCGAGGTGGTGAGGATTGTGTGTGAGGATCTCTCTAGGTTTAACATGAAAAGGACTCATGACTTGTTGGAGAGAAAAACTGGAGGCCTTGTTGTTTGGAGATCTGGAAGTAAGATAATATTATACAGAGGGACTGATTATAAGTACCCTTACTTCCTATCTGATAAAGTGTCGAGAGATGACAACACTGGTGATGCTATGCAACATATGGATGAGGATGCTAAAAATTTTGATAAAAGAGAGAGTCACTCGTCTGAAAAGAATTCAGTGACATATGCTGGGAAAAGTTCAAATGTCAAAACAGCAAAACCAGCTTTGATACAAGGTGTTGGGAGTCCCAATAAAGTACGATTTCAACTGCCAGGTGAGGCAGAACTTGCAAAAGATGCAGACAGCTTGTTAACAGGTATCGGGCCACGATTCATTGATTGGTGGGGATATGACCCTCTGCCTGTTGACGCTGATCTTCTACCAGCTGTTATTCCTGGATATAGGAAGCCATTTCGCCTTCTTCCTTATGGTGTGAAGCCTAAACTAACAGATGATGAAATGACCACAATGAGGAGACTTGGCAAACATTTACCATGTCATTTTGCATTAGGTAGAAATAAAAAACTTCATGGATTGGCTGCTGCAATTATTAAGCTTTGGGAAAGATGTGAGATTGTCAAGATTGCCATAAAGAGAGGTGTGCTGAATACTAATGGCGAGTTGATGGCTGAAGAGATAAAGTATCTGACTGGAGGTACTCTCATTGCTCGGGATAAAGAATTCATCGTTTTCTACAGAGGAAAAGACTTCTTGCCAACTGCAGTGTCATCCGCAATTGAACAGCGAAGGAGTATTGGAATGTACAAACTGAAGACTAGAAACAGTTTGTCAGTTACAGACGATCCAGACCTGAAAGATGGAACCATAGAGTGTGATTCTGAAGTCAAGGGTATGAACTTCAAGAAAGATACTAAACAAGGAATGTTGACTGAGGCTGAGGCAGCTATTAAAAGCACTAGCATCAAATTGTCAATGGCACTAGAAGAGAAAGCAAAGGCTGAAAAACTTCTATCGGAGCTGGAAAATGCAGAGAGCCCCCAAGAAGAAGAAATCAATAAAGAGGGTATTACTGAAGAAGAGAAATACATGTTGCGGAGGATTGGCTTGAAGATGAGTCCCTTCCTGTTACTAGGTAGACGAGGGGTTTTTGATGGAACGGTGGAAAATATGCATCTTCATTGGAAGTATCGGGAACTTGTGAAGATAATATGTAATAAACAGATGAGCCTGGAAGATGTCCAACAGATAGCTCAAACCTTAGAGGCAGAAAGTGGCGGAATATTAATTGCAGTAGAAAGAGTGAACAAGAGCTATGCAATCATTGTGTATCGTGGAAAGAATTATAGTCGGCCTGCAAGTTTAAGGCCTCGTACACTTTTAAATAAAAAACAAGCATTGAAGCGCTCTATAGAAGCACAGCGCTGTGAGTCATTGAAGCTCCATGTTTTGAAACTAGATAGGAACATAAACGAATTGAAACATCAAATGGCTAAAGATATGGAGGCAAACAGTAAGCAGACTTCTGTTGACAATCAACAAGCAATACAGGAACAGCCAGTTGAGCTGATTGATAGTGGTGGAGCACATCAAGCTGAACCAGGAAATTCCATTAATTGGAATTATCCTAAAGAAGCTTCGGTTGACTATCAACAAACAATGCAGGAGCAATCAGTTGAGCTGTTTGATGGTGGTGGAGCTGTTCAAAGTGAACCACAAAACTCCATAAATTGGAACTCTCCCAAAGAAGCTTCTGTCGATAATCAACAGGCAATACAGGGGCAGTCATTTGAGCTCATTGATAGAAGTGAAGCTCATCATGGTGAACCAGAAAATTCCATAGATTGGAATTCTCCTGAAGAAGCTTCTGTTGACAATCAACAAGCTATACAAGGGCAGCCAGTTGAGCTGATTGATGGTGGTGGAGCTCATCAAGATGAACCAGAATCTTGGTCTGGTTTGATTCCTAAAGAAACAAAGTTGGACAGAGACAGTGATTCTGTTGTTGATACTCAGCATTGCGTCTCTATTAGCAAGGTAATGGAATCATCAATCGTAGCATCAGAGAGTGATCCTGACCTATCAGCTCTGGTGAGAGATATGAGTTCCAACGAGTTGCCTTCTAGATCTGTATATCTTTCCAATAGAGAAAGACTTCTTCTACGAAAGCAGGCATTAAAGATGAAAAAGCGGCCTGTCCTTTCCGTAGGAAAGAGCAACATTGTAACTGGTCTTGCGAAAGCAATCAAAGCTCACTTCCAGAAGCACCCTCTTGCCATAGTTAATGTCAAAGGAAGGGCAAAAGGGACCTCAATTCAGGAGGTGGTGTCCAAGCTAGAGCAAGAAACTGGTGCCGTTCTAGTCTCTCAAGAACTCAACAAAGTCATACTGTACAGGGGTTGGGGGGAAGGAGAGAAACCTAGCACTGCAATAAATTTTGATAAAGTGGGTAAAGAGGTAGCGGCAAAGCCTGGCGTCTCTCCTGAACTCTTGGAAGCAATCAGAGTTGAATGTGGATTGCAGTAA

>Glyma19g01700.1   sequence type=predicted peptide   gene model=Glyma19g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLPATHFHYFHTFPSSSSSSSSSSSSSSTLHIFPLQFPKPKPKFLIRCSDTETLPDSAIQRIADKLRSLGIADQPSTATPGPSDSDAGEIFVPLPQQLPTRRVGHTIDPTWAKRERREDKVPTLAELSLSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDNTGDAMQHMDEDAKNFDKRESHSSEKNSVTYAGKSSNVKTAKPALIQGVGSPNKVRFQLPGEAELAKDADSLLTGIGPRFIDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLNTNGELMAEEIKYLTGGTLIARDKEFIVFYRGKDFLPTAVSSAIEQRRSIGMYKLKTRNSLSVTDDPDLKDGTIECDSEVKGMNFKKDTKQGMLTEAEAAIKSTSIKLSMALEEKAKAEKLLSELENAESPQEEEINKEGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNYSRPASLRPRTLLNKKQALKRSIEAQRCESLKLHVLKLDRNINELKHQMAKDMEANSKQTSVDNQQAIQEQPVELIDSGGAHQAEPGNSINWNYPKEASVDYQQTMQEQSVELFDGGGAVQSEPQNSINWNSPKEASVDNQQAIQGQSFELIDRSEAHHGEPENSIDWNSPEEASVDNQQAIQGQPVELIDGGGAHQDEPESWSGLIPKETKLDRDSDSVVDTQHCVSISKVMESSIVASESDPDLSALVRDMSSNELPSRSVYLSNRERLLLRKQALKMKKRPVLSVGKSNIVTGLAKAIKAHFQKHPLAIVNVKGRAKGTSIQEVVSKLEQETGAVLVSQELNKVILYRGWGEGEKPSTAINFDKVGKEVAAKPGVSPELLEAIRVECGLQ*







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