SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01370 | AT | Annotation by Michelle Graham. TAIR10: CRM family member 2 | chr3:139033-143477 FORWARD LENGTH=1011 | SoyBase | E_val: 0 | ISS |
| GO:0000372 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Group I intron splicing | SoyBase | N/A | ISS |
| GO:0000373 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Group II intron splicing | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG1990 | KOG | Poly(A)-specific exoribonuclease PARN | JGI | ISS | |
| PF01985 | PFAM | CRS1 / YhbY (CRM) domain | JGI | ISS | |
| UniRef100_G7KJD3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloroplastic group IIA intron splicing facilitator CRS1 n=1 Tax=Medicago truncatula RepID=G7KJD3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F31E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F31E related cluster n=1 Tax=unknown RepID=UPI000233F31E | SoyBase | E_val: 0 | ISS |
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Glyma19g01700 not represented in the dataset |
Glyma19g01700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g014000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01700.1 sequence type=CDS gene model=Glyma19g01700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGCTTCCTGCAACTCACTTTCACTACTTCCACACCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATTGCACATTTTCCCTCTTCAATTCCCCAAACCCAAACCCAAATTCCTCATTCGCTGCTCCGACACAGAAACCCTCCCGGACTCCGCCATTCAGCGAATCGCCGACAAGCTCCGCAGCCTCGGCATCGCCGACCAACCCTCCACCGCCACTCCTGGTCCCTCCGACTCCGATGCCGGTGAAATCTTCGTTCCCCTTCCGCAGCAACTCCCGACGCGGCGCGTGGGGCACACGATCGACCCGACCTGGGCGAAGCGGGAGAGGCGAGAGGACAAGGTTCCGACGCTGGCAGAGCTGAGCCTCTCGGATGCCGAGATTCGGCGGCTCACGACGGCTGGGCTGGCGATGAGGCAGAAGCTGCGTGTCGGGAAGGCGGGACTCACGGAAGGGATCGTGAACGGGATTCACGAACGGTGGAGGAGTTTCGAGGTGGTGAGGATTGTGTGTGAGGATCTCTCTAGGTTTAACATGAAAAGGACTCATGACTTGTTGGAGAGAAAAACTGGAGGCCTTGTTGTTTGGAGATCTGGAAGTAAGATAATATTATACAGAGGGACTGATTATAAGTACCCTTACTTCCTATCTGATAAAGTGTCGAGAGATGACAACACTGGTGATGCTATGCAACATATGGATGAGGATGCTAAAAATTTTGATAAAAGAGAGAGTCACTCGTCTGAAAAGAATTCAGTGACATATGCTGGGAAAAGTTCAAATGTCAAAACAGCAAAACCAGCTTTGATACAAGGTGTTGGGAGTCCCAATAAAGTACGATTTCAACTGCCAGGTGAGGCAGAACTTGCAAAAGATGCAGACAGCTTGTTAACAGGTATCGGGCCACGATTCATTGATTGGTGGGGATATGACCCTCTGCCTGTTGACGCTGATCTTCTACCAGCTGTTATTCCTGGATATAGGAAGCCATTTCGCCTTCTTCCTTATGGTGTGAAGCCTAAACTAACAGATGATGAAATGACCACAATGAGGAGACTTGGCAAACATTTACCATGTCATTTTGCATTAGGTAGAAATAAAAAACTTCATGGATTGGCTGCTGCAATTATTAAGCTTTGGGAAAGATGTGAGATTGTCAAGATTGCCATAAAGAGAGGTGTGCTGAATACTAATGGCGAGTTGATGGCTGAAGAGATAAAGTATCTGACTGGAGGTACTCTCATTGCTCGGGATAAAGAATTCATCGTTTTCTACAGAGGAAAAGACTTCTTGCCAACTGCAGTGTCATCCGCAATTGAACAGCGAAGGAGTATTGGAATGTACAAACTGAAGACTAGAAACAGTTTGTCAGTTACAGACGATCCAGACCTGAAAGATGGAACCATAGAGTGTGATTCTGAAGTCAAGGGTATGAACTTCAAGAAAGATACTAAACAAGGAATGTTGACTGAGGCTGAGGCAGCTATTAAAAGCACTAGCATCAAATTGTCAATGGCACTAGAAGAGAAAGCAAAGGCTGAAAAACTTCTATCGGAGCTGGAAAATGCAGAGAGCCCCCAAGAAGAAGAAATCAATAAAGAGGGTATTACTGAAGAAGAGAAATACATGTTGCGGAGGATTGGCTTGAAGATGAGTCCCTTCCTGTTACTAGGTAGACGAGGGGTTTTTGATGGAACGGTGGAAAATATGCATCTTCATTGGAAGTATCGGGAACTTGTGAAGATAATATGTAATAAACAGATGAGCCTGGAAGATGTCCAACAGATAGCTCAAACCTTAGAGGCAGAAAGTGGCGGAATATTAATTGCAGTAGAAAGAGTGAACAAGAGCTATGCAATCATTGTGTATCGTGGAAAGAATTATAGTCGGCCTGCAAGTTTAAGGCCTCGTACACTTTTAAATAAAAAACAAGCATTGAAGCGCTCTATAGAAGCACAGCGCTGTGAGTCATTGAAGCTCCATGTTTTGAAACTAGATAGGAACATAAACGAATTGAAACATCAAATGGCTAAAGATATGGAGGCAAACAGTAAGCAGACTTCTGTTGACAATCAACAAGCAATACAGGAACAGCCAGTTGAGCTGATTGATAGTGGTGGAGCACATCAAGCTGAACCAGGAAATTCCATTAATTGGAATTATCCTAAAGAAGCTTCGGTTGACTATCAACAAACAATGCAGGAGCAATCAGTTGAGCTGTTTGATGGTGGTGGAGCTGTTCAAAGTGAACCACAAAACTCCATAAATTGGAACTCTCCCAAAGAAGCTTCTGTCGATAATCAACAGGCAATACAGGGGCAGTCATTTGAGCTCATTGATAGAAGTGAAGCTCATCATGGTGAACCAGAAAATTCCATAGATTGGAATTCTCCTGAAGAAGCTTCTGTTGACAATCAACAAGCTATACAAGGGCAGCCAGTTGAGCTGATTGATGGTGGTGGAGCTCATCAAGATGAACCAGAATCTTGGTCTGGTTTGATTCCTAAAGAAACAAAGTTGGACAGAGACAGTGATTCTGTTGTTGATACTCAGCATTGCGTCTCTATTAGCAAGGTAATGGAATCATCAATCGTAGCATCAGAGAGTGATCCTGACCTATCAGCTCTGGTGAGAGATATGAGTTCCAACGAGTTGCCTTCTAGATCTGTATATCTTTCCAATAGAGAAAGACTTCTTCTACGAAAGCAGGCATTAAAGATGAAAAAGCGGCCTGTCCTTTCCGTAGGAAAGAGCAACATTGTAACTGGTCTTGCGAAAGCAATCAAAGCTCACTTCCAGAAGCACCCTCTTGCCATAGTTAATGTCAAAGGAAGGGCAAAAGGGACCTCAATTCAGGAGGTGGTGTCCAAGCTAGAGCAAGAAACTGGTGCCGTTCTAGTCTCTCAAGAACTCAACAAAGTCATACTGTACAGGGGTTGGGGGGAAGGAGAGAAACCTAGCACTGCAATAAATTTTGATAAAGTGGGTAAAGAGGTAGCGGCAAAGCCTGGCGTCTCTCCTGAACTCTTGGAAGCAATCAGAGTTGAATGTGGATTGCAGTAA
>Glyma19g01700.1 sequence type=predicted peptide gene model=Glyma19g01700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLPATHFHYFHTFPSSSSSSSSSSSSSSTLHIFPLQFPKPKPKFLIRCSDTETLPDSAIQRIADKLRSLGIADQPSTATPGPSDSDAGEIFVPLPQQLPTRRVGHTIDPTWAKRERREDKVPTLAELSLSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDNTGDAMQHMDEDAKNFDKRESHSSEKNSVTYAGKSSNVKTAKPALIQGVGSPNKVRFQLPGEAELAKDADSLLTGIGPRFIDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLNTNGELMAEEIKYLTGGTLIARDKEFIVFYRGKDFLPTAVSSAIEQRRSIGMYKLKTRNSLSVTDDPDLKDGTIECDSEVKGMNFKKDTKQGMLTEAEAAIKSTSIKLSMALEEKAKAEKLLSELENAESPQEEEINKEGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNYSRPASLRPRTLLNKKQALKRSIEAQRCESLKLHVLKLDRNINELKHQMAKDMEANSKQTSVDNQQAIQEQPVELIDSGGAHQAEPGNSINWNYPKEASVDYQQTMQEQSVELFDGGGAVQSEPQNSINWNSPKEASVDNQQAIQGQSFELIDRSEAHHGEPENSIDWNSPEEASVDNQQAIQGQPVELIDGGGAHQDEPESWSGLIPKETKLDRDSDSVVDTQHCVSISKVMESSIVASESDPDLSALVRDMSSNELPSRSVYLSNRERLLLRKQALKMKKRPVLSVGKSNIVTGLAKAIKAHFQKHPLAIVNVKGRAKGTSIQEVVSKLEQETGAVLVSQELNKVILYRGWGEGEKPSTAINFDKVGKEVAAKPGVSPELLEAIRVECGLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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