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Report for Sequence Feature Glyma19g01640

Feature Type:gene_model
Chromosome:Gm19
Start:1254030
stop:1256760
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g01640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28210AT Annotation by Michelle Graham. TAIR10: zinc finger (AN1-like) family protein | chr3:10520585-10521223 FORWARD LENGTH=186 SoyBaseE_val: 1.00E-73ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR14677Panther ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED JGI ISS
PF01428PFAM AN1-like Zinc finger JGI ISS
UniRef100_B3IX35UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor C2H2 n=1 Tax=Lotus japonicus RepID=B3IX35_LOTJA SoyBaseE_val: 1.00E-86ISS
UniRef100_I1N5X4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5X4_SOYBN SoyBaseE_val: 8.00E-115ISS

Expression Patterns of Glyma19g01640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01640
ParalogEvidenceComments
Glyma13g04630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g013700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g01640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g01640
>Glyma19g01640.1   sequence type=CDS   gene model=Glyma19g01640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGGCGGAACAGAAGCTTTTCCAGATTTGGGTAAACACTGCCAGCACCGCGATTGCAACCAGCTCGATTTTCTTCCTTTCACCTGCGACGGTTGCCAACAGGTGTTTTGTTTGGAACACAGATCCTACAAGTCCCATTCATGCCCAAAATCCGACCACAACAGCAGAAAGGTGGTTGTTTGCGAAGCATGTTCCATGTCCATTGAGACCACCGGCAACGTGGGACAAGACAAAAAGGCAATCTTGCAGAAGCATCTCAAGTCTGGTATCTGTGACCCCACCAAGAAGAAGAAACCAACTTGCCCCGTCAAGCGTTGCAAGGAGGTTTTGACGTTTTCCAACACCAGCACATGTAAAACATGCCACATTAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGTAGCAGAGGAGCTTCAGCTTCTGTTGCTAATGGTTTGTGGAACAATAGGTTCTTGGCTGCTTTTGGGTAA
Predicted protein sequences of Glyma19g01640
>Glyma19g01640.1   sequence type=predicted peptide   gene model=Glyma19g01640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASGGTEAFPDLGKHCQHRDCNQLDFLPFTCDGCQQVFCLEHRSYKSHSCPKSDHNSRKVVVCEACSMSIETTGNVGQDKKAILQKHLKSGICDPTKKKKPTCPVKRCKEVLTFSNTSTCKTCHIKVCLKHRFPADHACSRGASASVANGLWNNRFLAAFG*






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