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Report for Sequence Feature Glyma19g01590

Feature Type:gene_model
Chromosome:Gm19
Start:1208280
stop:1210812
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g01590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14920AT Annotation by Michelle Graham. TAIR10: Gibberellin-regulated family protein | chr5:4826598-4827761 FORWARD LENGTH=275 SoyBaseE_val: 4.00E-27ISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02704PFAM Gibberellin regulated protein JGI ISS
UniRef100_B9RUF0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Extensin, proline-rich protein, putative n=1 Tax=Ricinus communis RepID=B9RUF0_RICCO SoyBaseE_val: 8.00E-33ISS
UniRef100_I1N5W9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5W9_SOYBN SoyBaseE_val: 7.00E-129ISS

Expression Patterns of Glyma19g01590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01590
ParalogEvidenceComments
Glyma13g04530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g013000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g01590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g01590
>Glyma19g01590.2   sequence type=transcript   gene model=Glyma19g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAATTTGGTGACAGCTAGGCATTAATTCACCCCAGCCTATACCCTAAAAACGTTTTCTTCTTGTCCATAACTTTTTCTCATCTCTCTCCCCATTCTTGACCTCTATATAATACAACAACTAGTTGTTACTTGGAACTAACACACACTGAAGAATAGCAGCAAGTAGTAGCTCTTGACCCTTCTTTCCACCTTTTCTGGTCCCTCCCTCCAGAAATGGCTTCTAATTCCATTCTTCTTCTTTGTATCTTTCTTGTGGTTGCCACTAAGGTTTTTTCCTATGATGAAGATCTCAAGACAGTGGTTCCTGCACCTGCTCCACCAGTGAAGGCACCAACTCTTGCCCCTCCAGTGAAATCACCATCTTACCCTCCAGGGCCAGTGACCACACCAACAGTTCCAACACCCACTGTTAAGGTACCCCCTCCCCCTCAGTCTCCAGTAGTTAAGCCACCAACACCAACAGTTCCACCACCCACTGTTAAGGTACCCCCTCCCCCTCAGTCTCCAGTAGTAAAGCCACCAACTCCAACACCAACTTCCCCAGTGGTGTACCCTCCTCCTGTTGCTCCATCTCCACCAGCTCCTGTAGTGAAATCAAACAAGGATTGCATTCCACTATGTGATTATAGGTGCTCATTACACTCAAGGAAGAAATTGTGCATGAGAGCATGCATAACCTGTTGTGACCGATGCAAATGTGTCCCTCCTGGAACTTATGGTAACAGGGAAAAGTGTGGCAAGTGCTACACTGACATGCTGACTCACGGCAACAAATTCAAGTGCCCATAGAAGAAGCCTAATATCTAGTAACTTACCTAAGCTTTTTTGTTAATCAAGTTTGAATCATGAGTAATGTGGTTTGAGTTGCTAGTGTATTTAATAACCGAGAGTGATAATCATAATTGTACAAGCTATCGTGTTAATCAAAATAGTCAACACTGTTTGTGTTGTCTATAGGATCCATTTGTGGTCCATGAAGAAGTTTATATTCATAATGATTAATATAAGGATGTATTGCTGTACGAAATTCAGAACTATAATTAAATATGAATATGACCTTGCTAAATTTGATTCTTTT
Coding sequences of Glyma19g01590
>Glyma19g01590.1   sequence type=CDS   gene model=Glyma19g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTAATTCCATTCTTCTTCTTTGTATCTTTCTTGTGGTTGCCACTAAGGTTTTTTCCTATGATGAAGATCTCAAGACAGTGAAATATGGCATTTTGGTACAGGTTCCTGCACCTGCTCCACCAGTGAAGGCACCAACTCTTGCCCCTCCAGTGAAATCACCATCTTACCCTCCAGGGCCAGTGACCACACCAACAGTTCCAACACCCACTGTTAAGGTACCCCCTCCCCCTCAGTCTCCAGTAGTTAAGCCACCAACACCAACAGTTCCACCACCCACTGTTAAGGTACCCCCTCCCCCTCAGTCTCCAGTAGTAAAGCCACCAACTCCAACACCAACTTCCCCAGTGGTGTACCCTCCTCCTGTTGCTCCATCTCCACCAGCTCCTGTAGTGAAATCAAACAAGGATTGCATTCCACTATGTGATTATAGGTGCTCATTACACTCAAGGAAGAAATTGTGCATGAGAGCATGCATAACCTGTTGTGACCGATGCAAATGTGTCCCTCCTGGAACTTATGGTAACAGGGAAAAGTGTGGCAAGTGCTACACTGACATGCTGACTCACGGCAACAAATTCAAGTGCCCATAG

>Glyma19g01590.2   sequence type=CDS   gene model=Glyma19g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTAATTCCATTCTTCTTCTTTGTATCTTTCTTGTGGTTGCCACTAAGGTTTTTTCCTATGATGAAGATCTCAAGACAGTGGTTCCTGCACCTGCTCCACCAGTGAAGGCACCAACTCTTGCCCCTCCAGTGAAATCACCATCTTACCCTCCAGGGCCAGTGACCACACCAACAGTTCCAACACCCACTGTTAAGGTACCCCCTCCCCCTCAGTCTCCAGTAGTTAAGCCACCAACACCAACAGTTCCACCACCCACTGTTAAGGTACCCCCTCCCCCTCAGTCTCCAGTAGTAAAGCCACCAACTCCAACACCAACTTCCCCAGTGGTGTACCCTCCTCCTGTTGCTCCATCTCCACCAGCTCCTGTAGTGAAATCAAACAAGGATTGCATTCCACTATGTGATTATAGGTGCTCATTACACTCAAGGAAGAAATTGTGCATGAGAGCATGCATAACCTGTTGTGACCGATGCAAATGTGTCCCTCCTGGAACTTATGGTAACAGGGAAAAGTGTGGCAAGTGCTACACTGACATGCTGACTCACGGCAACAAATTCAAGTGCCCATAG
Predicted protein sequences of Glyma19g01590
>Glyma19g01590.1   sequence type=predicted peptide   gene model=Glyma19g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNSILLLCIFLVVATKVFSYDEDLKTVKYGILVQVPAPAPPVKAPTLAPPVKSPSYPPGPVTTPTVPTPTVKVPPPPQSPVVKPPTPTVPPPTVKVPPPPQSPVVKPPTPTPTSPVVYPPPVAPSPPAPVVKSNKDCIPLCDYRCSLHSRKKLCMRACITCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKFKCP*

>Glyma19g01590.2   sequence type=predicted peptide   gene model=Glyma19g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNSILLLCIFLVVATKVFSYDEDLKTVVPAPAPPVKAPTLAPPVKSPSYPPGPVTTPTVPTPTVKVPPPPQSPVVKPPTPTVPPPTVKVPPPPQSPVVKPPTPTPTSPVVYPPPVAPSPPAPVVKSNKDCIPLCDYRCSLHSRKKLCMRACITCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKFKCP*






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