Glyma19g01570 - SoyBase

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Report for Sequence Feature Glyma19g01570

Feature Type:	gene_model
Chromosome:	Gm19
Start:	1185588
stop:	1190215
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51080	AT	Annotation by Michelle Graham. TAIR10: RNase H family protein \| chr5:20769022-20770486 REVERSE LENGTH=259	SoyBase	E_val: 8.00E-41	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004518	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nuclease activity	SoyBase	N/A	ISS
GO:0004523	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease H activity	SoyBase	N/A	ISS
UniRef100_B9RUE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclease, putative n=1 Tax=Ricinus communis RepID=B9RUE6_RICCO	SoyBase	E_val: 5.00E-55	ISS
UniRef100_I1N5W7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5W7_SOYBN	SoyBase	E_val: 8.00E-101	ISS

Expression Patterns of Glyma19g01570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01570

Paralog	Evidence	Comments
Glyma13g04491	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g01570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g01570

Limit To All Plant Sequences

>Glyma19g01570.2   sequence type=CDS   gene model=Glyma19g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGAGAAAGACGCTTTCTACGTTGTAAGGAAAGGGGATGTTGTTGGCATCTACAAGTCCTTCAGTGACATCCGACCTTCCCTTGCATCTTTTGTATCTAGTGACCCTGTAAGTATTTACAAAGGGTATTCTTTACCTCCGAAGACTGAAGAGTACCTTGTCTCACCTGCGGATTGTAAATTTCTTTCGTGTAACCTTCATTTTGATGGTGCGTCCAAAGGAAATCCTGGACCAGCTGGTGCAGGAGCTATACTGCGTGATGGGAGCAAGGTCTATTGGTTGCGTGAAGGAGTGGGCATTCAAACAAATAATATTCAGGGTTTATGGAAAATAAAAAACCAGAATATGGGTACCTTGTGTGGTGAGGCCAAGGAGCTGAAGGATAAGTTTTTGTCATTCAAGATCAGTCATATTCCTAGGGAATACAACTCTGAAGCTGATGCTCAAGCAAACCTGGCCATAAATCTCAGAGCTGGTGAAGTTCAAGAAGATTGTCAGTTGCTTTAA

Predicted protein sequences of Glyma19g01570

Limit To All Plant Sequences

>Glyma19g01570.2   sequence type=predicted peptide   gene model=Glyma19g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEKDAFYVVRKGDVVGIYKSFSDIRPSLASFVSSDPVSIYKGYSLPPKTEEYLVSPADCKFLSCNLHFDGASKGNPGPAGAGAILRDGSKVYWLREGVGIQTNNIQGLWKIKNQNMGTLCGEAKELKDKFLSFKISHIPREYNSEADAQANLAINLRAGEVQEDCQLL*

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