SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G28180 | AT | Annotation by Michelle Graham. TAIR10: Cellulose-synthase-like C4 | chr3:10506110-10509067 FORWARD LENGTH=673 | SoyBase | E_val: 0 | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016759 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity | SoyBase | N/A | ISS |
| PTHR10587 | Panther | N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED | JGI | ISS | |
| PTHR10587:SF18 | Panther | N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED | JGI | ISS | |
| PF00535 | PFAM | Glycosyl transferase family 2 | JGI | ISS | |
| UniRef100_B9RUD8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RUD8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N5W6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5W6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g01560 not represented in the dataset |
Glyma19g01560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g04480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g012700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01560.1 sequence type=CDS gene model=Glyma19g01560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCAAATACTGAGAAGTCTAACAACAACGACTTCACCTTGTTACAAGTTCATGATTCGGATTCTCCCATGTTTCCAGAGAAGCAGAAAGCCACAAGCCGCAAGCAGTTTACTTGGTTTCTTCTCCTTAAACTCCACAGAGTTCTGACATGTTTGTCATGGTTGACCAATTGTCTCAAAGCCACTTTTGCTTTGGTCAAGAAGCGCGTTTCATTGGCTGACATGAGCGATGAGGGCCCTAAGAGTAGAGGAAAGTTGTACAGGTTCATCAAAATCTTTCTTGCTCTCTCAATTGGAGGCTTGGCCATAGAGATCATTGCTCATTTCAACAAATGGAACTTGCACAACATGATTCAGCCTTGGGAGGTTCAGGGTCTGCTGCAATGGTGCTATGTGGCTTGGCTCTCCTTCAGGGAAGACTACGTTGCTCCATTAGTCTTGATGGTTTCAAAGTTCTGCATTGTCCTCTTCTTGATTCAGTCCTTGGATCGCCTTGTTCTCTGCCTTGGATGCTTCTGGATCAAGTACAAGAAGTTGAAGCCAACCTTTGAGGCAGATGCATGTGATGTTGAGGACCCTTCAAACTTCCCAATGGTCCTTGTTCAGATTCCCATGTGCAATGAGAGAGAGGTTTATTCACAATCAATTGGTGCTGCTGCTCAACTTGATTGGCCAAAAGACAGAATATTGATTCAAGTGCTAGATGATTCGGATGATGGGAATTTACAGCTGCTCATCAAAGAAGAGGTGGCCTCATGGAAAGAGAAAGGGGTGAACATTGTGTACAGGCACAGATTGATTAGAACTGGGTATAAAGCTGGGAATCTTAAGTCAGCAATGTCATGTGACTATGTCAAGGACTATGAATTTGTGGCAATATTAGATGCAGATTTCCAGCCCAATCCTGATTTCCTCAAACTAACCATTCCCCATTTCAAGGGAAAACCTGATTTGGGGCTGGTCCAGGCTAGATGGTCCTTTGTGAACAAGGATGAGAATCTACTCACAAGGCTCCAGAACATCAATTTGTGCTTTCATTTTGAGGTGGAACAACAAGTTAATGGCTACTTTCTAAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGGATAAAGGCTTTGGAGGAATCAGGAGGGTGGTTGGAGAGGACCACAGTTGAGGACATGGACATAGCAGTTAGAGCTCACTTGAATGGATGGAAGTTTATCTTCCTTAATGATGTCAAAGTTCTGTGTGAATTACCAGAGTCTTATGAAGCTTATAAGAAACAACAACATCGTTGGCACTCTGGTCCAATGCAGCTTTTCAGGCTATGCCTTCCTGCTATACTAACTTCCAAGATATCAGTCTGGAAGAAGACGAATTTGATATTTTTGTTCTTCCTATTGAGGAAACTTATACTCCCCTTCTACTCCTTCACCCTGTTTTGCATCATACTACCCTTGACCATGTTCATACCCGAGTCTGAACTACCCCTTTGGGTGATATGTTATGTCCCCATCATCATGTCTTTCCTAAACATCCTTCCATCCCCAAAATCTATCCCTTTCCTAGTTCCTTATCTTCTGTTTGAGAACACCATGTCAGTCACAAAGTTCAATGCCATGATTTCTGGATTGTTTCAGCTAGGAAGTGCTTATGAGTGGGTAGTGACAAAGAAGACAGGGAGATCCTCAGAGTCAGATTTGTTGGCCTTGGCTGAGAGAGAGTCAAAGTCTTCAAATGAAGAAAAGATTCTAAGAAGACACTCAGAGTCTGGCTTGGAGTTATTAGGCAAACTTAAGCAATCAGAAGTACCTTCAAAGAAAAAAAGAAACAAGCTCTATAGGAAGGAGCTAGCACTTGCACTTCTTTTGCTCACAGCATCTGCAAGAAGTCTTTTGTCAGCACATGGTGTTCACTTCTATTTTTTGCTCTTCCAAGGATTGTCATTTCTCATAATGGGTCTGGACTTGATTGGTGAGCAAGTGAGCTGA
>Glyma19g01560.1 sequence type=predicted peptide gene model=Glyma19g01560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPNTEKSNNNDFTLLQVHDSDSPMFPEKQKATSRKQFTWFLLLKLHRVLTCLSWLTNCLKATFALVKKRVSLADMSDEGPKSRGKLYRFIKIFLALSIGGLAIEIIAHFNKWNLHNMIQPWEVQGLLQWCYVAWLSFREDYVAPLVLMVSKFCIVLFLIQSLDRLVLCLGCFWIKYKKLKPTFEADACDVEDPSNFPMVLVQIPMCNEREVYSQSIGAAAQLDWPKDRILIQVLDDSDDGNLQLLIKEEVASWKEKGVNIVYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGKPDLGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGYFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPAILTSKISVWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPESELPLWVICYVPIIMSFLNILPSPKSIPFLVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKTGRSSESDLLALAERESKSSNEEKILRRHSESGLELLGKLKQSEVPSKKKRNKLYRKELALALLLLTASARSLLSAHGVHFYFLLFQGLSFLIMGLDLIGEQVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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