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Report for Sequence Feature Glyma19g01560

Feature Type:gene_model
Chromosome:Gm19
Start:1179479
stop:1183162
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G28180AT Annotation by Michelle Graham. TAIR10: Cellulose-synthase-like C4 | chr3:10506110-10509067 FORWARD LENGTH=673 SoyBaseE_val: 0ISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016759GO-mf Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity SoyBaseN/AISS
PTHR10587Panther N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED JGI ISS
PTHR10587:SF18Panther N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED JGI ISS
PF00535PFAM Glycosyl transferase family 2 JGI ISS
UniRef100_B9RUD8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RUD8_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N5W6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5W6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01560 not represented in the dataset

Glyma19g01560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g04480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g012700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01560.1   sequence type=CDS   gene model=Glyma19g01560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAATACTGAGAAGTCTAACAACAACGACTTCACCTTGTTACAAGTTCATGATTCGGATTCTCCCATGTTTCCAGAGAAGCAGAAAGCCACAAGCCGCAAGCAGTTTACTTGGTTTCTTCTCCTTAAACTCCACAGAGTTCTGACATGTTTGTCATGGTTGACCAATTGTCTCAAAGCCACTTTTGCTTTGGTCAAGAAGCGCGTTTCATTGGCTGACATGAGCGATGAGGGCCCTAAGAGTAGAGGAAAGTTGTACAGGTTCATCAAAATCTTTCTTGCTCTCTCAATTGGAGGCTTGGCCATAGAGATCATTGCTCATTTCAACAAATGGAACTTGCACAACATGATTCAGCCTTGGGAGGTTCAGGGTCTGCTGCAATGGTGCTATGTGGCTTGGCTCTCCTTCAGGGAAGACTACGTTGCTCCATTAGTCTTGATGGTTTCAAAGTTCTGCATTGTCCTCTTCTTGATTCAGTCCTTGGATCGCCTTGTTCTCTGCCTTGGATGCTTCTGGATCAAGTACAAGAAGTTGAAGCCAACCTTTGAGGCAGATGCATGTGATGTTGAGGACCCTTCAAACTTCCCAATGGTCCTTGTTCAGATTCCCATGTGCAATGAGAGAGAGGTTTATTCACAATCAATTGGTGCTGCTGCTCAACTTGATTGGCCAAAAGACAGAATATTGATTCAAGTGCTAGATGATTCGGATGATGGGAATTTACAGCTGCTCATCAAAGAAGAGGTGGCCTCATGGAAAGAGAAAGGGGTGAACATTGTGTACAGGCACAGATTGATTAGAACTGGGTATAAAGCTGGGAATCTTAAGTCAGCAATGTCATGTGACTATGTCAAGGACTATGAATTTGTGGCAATATTAGATGCAGATTTCCAGCCCAATCCTGATTTCCTCAAACTAACCATTCCCCATTTCAAGGGAAAACCTGATTTGGGGCTGGTCCAGGCTAGATGGTCCTTTGTGAACAAGGATGAGAATCTACTCACAAGGCTCCAGAACATCAATTTGTGCTTTCATTTTGAGGTGGAACAACAAGTTAATGGCTACTTTCTAAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGGATAAAGGCTTTGGAGGAATCAGGAGGGTGGTTGGAGAGGACCACAGTTGAGGACATGGACATAGCAGTTAGAGCTCACTTGAATGGATGGAAGTTTATCTTCCTTAATGATGTCAAAGTTCTGTGTGAATTACCAGAGTCTTATGAAGCTTATAAGAAACAACAACATCGTTGGCACTCTGGTCCAATGCAGCTTTTCAGGCTATGCCTTCCTGCTATACTAACTTCCAAGATATCAGTCTGGAAGAAGACGAATTTGATATTTTTGTTCTTCCTATTGAGGAAACTTATACTCCCCTTCTACTCCTTCACCCTGTTTTGCATCATACTACCCTTGACCATGTTCATACCCGAGTCTGAACTACCCCTTTGGGTGATATGTTATGTCCCCATCATCATGTCTTTCCTAAACATCCTTCCATCCCCAAAATCTATCCCTTTCCTAGTTCCTTATCTTCTGTTTGAGAACACCATGTCAGTCACAAAGTTCAATGCCATGATTTCTGGATTGTTTCAGCTAGGAAGTGCTTATGAGTGGGTAGTGACAAAGAAGACAGGGAGATCCTCAGAGTCAGATTTGTTGGCCTTGGCTGAGAGAGAGTCAAAGTCTTCAAATGAAGAAAAGATTCTAAGAAGACACTCAGAGTCTGGCTTGGAGTTATTAGGCAAACTTAAGCAATCAGAAGTACCTTCAAAGAAAAAAAGAAACAAGCTCTATAGGAAGGAGCTAGCACTTGCACTTCTTTTGCTCACAGCATCTGCAAGAAGTCTTTTGTCAGCACATGGTGTTCACTTCTATTTTTTGCTCTTCCAAGGATTGTCATTTCTCATAATGGGTCTGGACTTGATTGGTGAGCAAGTGAGCTGA

>Glyma19g01560.1   sequence type=predicted peptide   gene model=Glyma19g01560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPNTEKSNNNDFTLLQVHDSDSPMFPEKQKATSRKQFTWFLLLKLHRVLTCLSWLTNCLKATFALVKKRVSLADMSDEGPKSRGKLYRFIKIFLALSIGGLAIEIIAHFNKWNLHNMIQPWEVQGLLQWCYVAWLSFREDYVAPLVLMVSKFCIVLFLIQSLDRLVLCLGCFWIKYKKLKPTFEADACDVEDPSNFPMVLVQIPMCNEREVYSQSIGAAAQLDWPKDRILIQVLDDSDDGNLQLLIKEEVASWKEKGVNIVYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGKPDLGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGYFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPAILTSKISVWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPESELPLWVICYVPIIMSFLNILPSPKSIPFLVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKTGRSSESDLLALAERESKSSNEEKILRRHSESGLELLGKLKQSEVPSKKKRNKLYRKELALALLLLTASARSLLSAHGVHFYFLLFQGLSFLIMGLDLIGEQVS*







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