Report for Sequence Feature Glyma19g01490
Feature Type: gene_model
Chromosome: Gm19
Start: 1111660
stop: 1112725
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G40190 AT
Annotation by Michelle Graham. TAIR10: RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr5:16069298-16069849 REVERSE LENGTH=183
SoyBase E_val: 2.00E-78 ISS
GO:0006661 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process
SoyBase N/A ISS
GO:0016070 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA metabolic process
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
UniRef100_B9RUD3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RUD3_RICCO
SoyBase E_val: 6.00E-93 ISS
UniRef100_I1N5V9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5V9_SOYBN
SoyBase E_val: 4.00E-132 ISS
Expression Patterns of Glyma19g01490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g01490
Paralog Evidence Comments
Glyma13g04420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g01490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g011900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g01490
Coding sequences of Glyma19g01490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01490.1 sequence type=CDS gene model=Glyma19g01490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGCAGCAATTAGGGTTCGCGATCGAGCTATACCTAGACCCTGCGTTGGAGAATCAGGTTCTGAAAGCATGGAACGTTCTTGCGAGAAGACAAATCAGCACGCACCTGATAGAAATGGAGTCTCGGCCACACATAACCCTATTCTCGGCGCCATTTCTAGAACCTTCGAAGCTCGAATCTCTCCTGAAAGGCTTCGCATCGAAGCACGATCCTCTCCCTCTCACCTTCTCTTCCCTCGCCACTTTCCCCAACGACCCCGACAACCTCCTCTTCCTCGCCCCAACCCCTTCCCTCTCACTCCTCCACCTTCAGTCACAGCTCTGTGACGCTATCAGAAAAGAAGGCCTCGAAATCGGTGACGATTACGCTTTCAATTCCTGGATCCCTTATTGCTCCGTTGCACACCATGTCCCCAAAAACAGAATGCCTGAGGCTTTCTCCCTCTTGAGGGAACTCAAGCTTCCGGTTTCCGGTTACGCCATGGATATCGCTCTCGTTCAGTTCTCTCCGGTTCGGGAAATCTTCTCGTTTGTGCTCGGCAACAACGTAGACTCCTGA
Predicted protein sequences of Glyma19g01490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01490.1 sequence type=predicted peptide gene model=Glyma19g01490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSQQLGFAIELYLDPALENQVLKAWNVLARRQISTHLIEMESRPHITLFSAPFLEPSKLESLLKGFASKHDPLPLTFSSLATFPNDPDNLLFLAPTPSLSLLHLQSQLCDAIRKEGLEIGDDYAFNSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYAMDIALVQFSPVREIFSFVLGNNVDS*