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Report for Sequence Feature Glyma19g01480

Feature Type:gene_model
Chromosome:Gm19
Start:1097910
stop:1106450
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01420AT Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639 SoyBaseE_val: 0ISS
GO:0001561GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid alpha-oxidation SoyBaseN/AISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009830GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0034614GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to reactive oxygen species SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0071446GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to salicylic acid stimulus SoyBaseN/AISS
GO:0071732GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0016165GO-mf Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG2408 KOG Peroxidase/oxygenase JGI ISS
PTHR11903Panther PROSTAGLANDIN G/H SYNTHASE JGI ISS
PTHR11903:SF2Panther FEEBLY-LIKE PROTEIN JGI ISS
PF03098PFAM Animal haem peroxidase JGI ISS
UniRef100_I1N5V7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5V7_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q5GQ66UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alpha-dioxygenase n=1 Tax=Pisum sativum RepID=Q5GQ66_PEA SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01480 not represented in the dataset

Glyma19g01480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g011800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01480.1   sequence type=CDS   gene model=Glyma19g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTCTCTAGTAACGGATCTCATTAGAGCTCTTGCAGCAAGAGTTATACACCAACTCATCCATAAAGATTTCCATGAAGCAGTGGCTAGGATGACAATAATAGACGCTTTTCTCTTCATCATTGTACACTCCATAGACAAGTTGGGGTTATGGCATCGTTTGCCTGTTTTCTTTGGACTATTATACTTGGGCATTCGTCGTCACCTTCAACAACAATACAACCTCTTCAACGTTGGAACAACACCAGTAGGAATTAGGTTCAACCCTTCTGATTTTCCATACAGAACAGATGATGGAAAATATAATGACCCTTTCAACGAAGTTGCTGGCAGCCAAGGGTCTTTCTTTGGCAGAAATATTCTCCCTGTAGATCATAAAAACAAGCTGTTGAAGCCTGATCCAATGGTGGTAGCCACGAAACTACTAGCTAGGAGGACATACAAGGACACTGGGAAGCAATTCAATGTGATAGCAGCTTCTTGGATTCAGTTTATGATTCATGATTGGATCGATCATCTAGAGGACACCAATCAGATTGAACTCATCGCACCAAGAGAAGTTGCAAGCCAATGCCCTCTCAAATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCAAATCCGGATCGTCAAACATCCGTACACCTTGGTGGGATGGAAGCGTCATATATGGAAGCAATAGAGAAGTTTTAGAGAAAGTGAGAACTTTCAAAGATGGGAAGATAAAGATATCAAAGGATGGTCATCTTCTCCATAACGAAAATGGAACAGCAATTTCAGGTGATGTCCGGAATAGTTGGGCTGGTGTTTCAACCTTGCAGGCACTTTTCACTCAAGAGCACAATGCAGTATGTGATGCTCTCAAGAGTAATTATCCTCACTTGGAAGATGAAGAAGTTTATCGTCATGCAAGATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACTATCGATTGGACCGTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTGGTATGGATTATTGGGGAAGACATTTAAGGATACATTTGGGCATGTTGGTGGAGCCGCCTTGGGTGGACTAGTGGGTCTTAAGAGACCAGAAAATCATGGTGTCACATACTCTTTAACTGAGGAATTTGTGAGTGCTTATAGAATACACTCACTCTTGCCTGATAACTTGCAATTGAGAGACATATCTGCTACCCCAGGACCTAACAAATCTCCACCATTAATCAAAGAGATTCCTATGAAAAATTTGATTGGAGTGCAAGGAGAAGAAGCATTGACAAAAATAGGAGTTGAAAGGCAACTTGTGTCAATGGGTCATCAAGCTTGTGGGGCCCTAGAGCTTTGGAACTATCCATTGTGGCTCAGAGATCTTGTACCACAGAACATAGATGGAACCGAAAGGAAAGATCATATAGATCTTGCTGCTCTTGAAATTTACAGGGATAGAGAGAGGAGTGTGGCTAGATATAACCAATTCAGAAGGGCTTTATTGTTGATACCTATCTCCAAGTGGGAAGATCTAACAGATGACCAAGAAGCAATTCAAGTATTGGAAGAGGTATATGGTGATGACATTGAAGAGTTAGATCTACTAGTAGGCCTCATGGCAGAGAAGAAAATAAAGGGTTTTGCAATTAGCGAGACAGCTTTTACAATATTCATATTCATGTCAAGCAGGAGGCTAGAAGCTGACAGATTCTTCACTAGTAATTTTAATGAGGATGCGTATACCAAGAAAGGACTAGAATGGGTGAACACAACTGAGAGCTTGAAGAATGTGATTGATCGTCACTATCCTGAAATAACACATAAGTGGTTAAACTCTTCGAGTGTTTTTTCTGTTTGGAACTCACCCCCAAACACTCAAAATCCCATTCCTTTATACCTTCGTGTTCCCCATTAA

>Glyma19g01480.1   sequence type=predicted peptide   gene model=Glyma19g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWSLVTDLIRALAARVIHQLIHKDFHEAVARMTIIDAFLFIIVHSIDKLGLWHRLPVFFGLLYLGIRRHLQQQYNLFNVGTTPVGIRFNPSDFPYRTDDGKYNDPFNEVAGSQGSFFGRNILPVDHKNKLLKPDPMVVATKLLARRTYKDTGKQFNVIAASWIQFMIHDWIDHLEDTNQIELIAPREVASQCPLKSFKFYKTKEIPTGFFEIKSGSSNIRTPWWDGSVIYGSNREVLEKVRTFKDGKIKISKDGHLLHNENGTAISGDVRNSWAGVSTLQALFTQEHNAVCDALKSNYPHLEDEEVYRHARLVTSAVIAKVHTIDWTVELLKTDTLLAAMHANWYGLLGKTFKDTFGHVGGAALGGLVGLKRPENHGVTYSLTEEFVSAYRIHSLLPDNLQLRDISATPGPNKSPPLIKEIPMKNLIGVQGEEALTKIGVERQLVSMGHQACGALELWNYPLWLRDLVPQNIDGTERKDHIDLAALEIYRDRERSVARYNQFRRALLLIPISKWEDLTDDQEAIQVLEEVYGDDIEELDLLVGLMAEKKIKGFAISETAFTIFIFMSSRRLEADRFFTSNFNEDAYTKKGLEWVNTTESLKNVIDRHYPEITHKWLNSSSVFSVWNSPPNTQNPIPLYLRVPH*







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