Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g01470): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g01470): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma19g01470
Feature Type: gene_model
Chromosome: Gm19
Start: 1086840
stop: 1094141
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01420 AT
Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639
SoyBase E_val: 0 ISS
GO:0001561 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid alpha-oxidation
SoyBase N/A ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0006826 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron ion transport
SoyBase N/A ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0008219 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell death
SoyBase N/A ISS
GO:0009627 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0009751 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus
SoyBase N/A ISS
GO:0009830 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission
SoyBase N/A ISS
GO:0010106 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0034614 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to reactive oxygen species
SoyBase N/A ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0051707 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to other organism
SoyBase N/A ISS
GO:0071446 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to salicylic acid stimulus
SoyBase N/A ISS
GO:0071732 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004601 GO-mf
Annotation by Michelle Graham. GO Molecular Function: peroxidase activity
SoyBase N/A ISS
GO:0016165 GO-mf
Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity
SoyBase N/A ISS
GO:0020037 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heme binding
SoyBase N/A ISS
KOG2408
KOG
Peroxidase/oxygenase
JGI ISS
PTHR11903 Panther
PROSTAGLANDIN G/H SYNTHASE
JGI ISS
PTHR11903:SF2 Panther
FEEBLY-LIKE PROTEIN
JGI ISS
PF03098 PFAM
Animal haem peroxidase
JGI ISS
UniRef100_I1N5V6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5V6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q5GQ66 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Alpha-dioxygenase n=1 Tax=Pisum sativum RepID=Q5GQ66_PEA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g01470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g01470
Paralog Evidence Comments
Glyma13g04410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g01470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g011700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g01470
Coding sequences of Glyma19g01470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01470.1 sequence type=CDS gene model=Glyma19g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGGTCTGCAGTAACAGATCCCATTAGAGCTTTTTTTGCAAATTTTCTCCGCCATTTCATCCACAAAGACTTCCATGAAGCAGTGGCCAGAATGACCATAATAGATGCTTTCCTCTTCGTTATTGTGCACTCCATTGATAAGTTGGGGATATGGCCACGCTTGCCGGTTTTCTTAGGGCTATTGTACCTGGCGATTCGGCGGCGGCTTCATCAGGAGTACAACCTCTTCAACGTTGGAACAACACCGGTGGGGGTTAGGTTTAACCATTCTGATTTTCCATACAGAACAGCTGATGGAAAATATAATGACCCTTTCAACGAAGTTGCTGGCAGCCATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGAAAAAAAAGCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCTTTCAAATTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATTAAATCCGGATCATCAAACATCCGTACACCTTGGTGGGATGCAAGCGCAGTATATGGAAGCAATGGAGAAGTTTTACAGAGAGTGAGAACTTTCAAAGATGGAAAGATAAAGATATCAAAGGATGGCCACCTTCTTCATAATGAAAATGGAACAGCAATTGCAGGTGACATCCGCAATAGTTGGGCTGGTGTTTCAACCTTGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAGAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACCATTGATTGGACTGTAGAGCTCCTTAAAACTGATACTTTACTTGCAGGCATGCGTGCCAATTGGTATGGATTATTAGGGAAGAAATTTAAGGATACATTTGGGCATGTTGGTGGAGTCATCTTGGGAGGATTAGTGGGTCTTAAGAGACCAGAAAATCATGGTGTCACATACTCTCTAACAGAGGAATTTGTGACTGTTTATAGAATGCACTCACTCCTACCTGATAACCTACAGCTAAGAGACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGAAATAGGAGTTGCAAGGCAACTTGTGTCAATGGGTCACCAAGCTTGTGGGGCATTAGAGCTTTGGAACTACCCAGAGTGGCTCAGAGACCTCGTACCACAAAACATAGATGGCACAGATAGGCCTGATCATGTGGATCTAGCTGCTCTTGAAATTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGGCATTACTGTTGATACCTATCTCCAAGTGGGAAGATTTAACAGATGACAAGGAAGCAATTCAAGTATTGGAAGAGGTATACGGTGATGATGTTGAAGAGCTTGATGTACTGGTAGGCCTCATGGCGGAAAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATATACCAAGAAAGGACTGGAATGGGTGAATACAACTGAGAGCCTAAAGGATGTTATTGATCGTCACTATCCTGAAATGTCACACAAGTGGTTAAACTCTTCTAGTGCTTTCTCTGTTTGGGACTCACCACCAAACTCTCAAAATCATATACCTCTCTATCTTCGTGTTCCTCACTAA
Predicted protein sequences of Glyma19g01470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01470.1 sequence type=predicted peptide gene model=Glyma19g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MWSAVTDPIRAFFANFLRHFIHKDFHEAVARMTIIDAFLFVIVHSIDKLGIWPRLPVFLGLLYLAIRRRLHQEYNLFNVGTTPVGVRFNHSDFPYRTADGKYNDPFNEVAGSHGTFFGRNILPVDQKKKLLKPDPMVVATKLLARRTYKDTGKQFNVIAASWIQFMIHDWIDHLEDTNQIELIAPREVARQCPLKSFKFYKTKEIPTGFFEIKSGSSNIRTPWWDASAVYGSNGEVLQRVRTFKDGKIKISKDGHLLHNENGTAIAGDIRNSWAGVSTLQALFIQEHNAVCDNLKKHYPQLGDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHVGGVILGGLVGLKRPENHGVTYSLTEEFVTVYRMHSLLPDNLQLRDISATPGPNKSPPLVKEIPMKNLIGLQGEKTLSEIGVARQLVSMGHQACGALELWNYPEWLRDLVPQNIDGTDRPDHVDLAALEIYRDRERSVARYNQFRRALLLIPISKWEDLTDDKEAIQVLEEVYGDDVEELDVLVGLMAEKKIKGFAISETAFVIFLLMATRRLEADRFFTSNFNEETYTKKGLEWVNTTESLKDVIDRHYPEMSHKWLNSSSAFSVWDSPPNSQNHIPLYLRVPH*