SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01420 | AT | Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639 | SoyBase | E_val: 0 | ISS |
| GO:0001561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid alpha-oxidation | SoyBase | N/A | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0009830 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0034614 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0071446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0071732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004601 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peroxidase activity | SoyBase | N/A | ISS |
| GO:0016165 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG2408 | KOG | Peroxidase/oxygenase | JGI | ISS | |
| PTHR11903 | Panther | PROSTAGLANDIN G/H SYNTHASE | JGI | ISS | |
| PTHR11903:SF2 | Panther | FEEBLY-LIKE PROTEIN | JGI | ISS | |
| PF03098 | PFAM | Animal haem peroxidase | JGI | ISS | |
| UniRef100_I1N5V6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5V6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q5GQ66 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-dioxygenase n=1 Tax=Pisum sativum RepID=Q5GQ66_PEA | SoyBase | E_val: 0 | ISS |
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Glyma19g01470 not represented in the dataset |
Glyma19g01470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g04410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g011700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01470.1 sequence type=CDS gene model=Glyma19g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGTCTGCAGTAACAGATCCCATTAGAGCTTTTTTTGCAAATTTTCTCCGCCATTTCATCCACAAAGACTTCCATGAAGCAGTGGCCAGAATGACCATAATAGATGCTTTCCTCTTCGTTATTGTGCACTCCATTGATAAGTTGGGGATATGGCCACGCTTGCCGGTTTTCTTAGGGCTATTGTACCTGGCGATTCGGCGGCGGCTTCATCAGGAGTACAACCTCTTCAACGTTGGAACAACACCGGTGGGGGTTAGGTTTAACCATTCTGATTTTCCATACAGAACAGCTGATGGAAAATATAATGACCCTTTCAACGAAGTTGCTGGCAGCCATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGAAAAAAAAGCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGATTCAATTTATGATTCATGATTGGATCGATCATCTTGAGGACACAAACCAGATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCTTTCAAATTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATTAAATCCGGATCATCAAACATCCGTACACCTTGGTGGGATGCAAGCGCAGTATATGGAAGCAATGGAGAAGTTTTACAGAGAGTGAGAACTTTCAAAGATGGAAAGATAAAGATATCAAAGGATGGCCACCTTCTTCATAATGAAAATGGAACAGCAATTGCAGGTGACATCCGCAATAGTTGGGCTGGTGTTTCAACCTTGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAGAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACCATTGATTGGACTGTAGAGCTCCTTAAAACTGATACTTTACTTGCAGGCATGCGTGCCAATTGGTATGGATTATTAGGGAAGAAATTTAAGGATACATTTGGGCATGTTGGTGGAGTCATCTTGGGAGGATTAGTGGGTCTTAAGAGACCAGAAAATCATGGTGTCACATACTCTCTAACAGAGGAATTTGTGACTGTTTATAGAATGCACTCACTCCTACCTGATAACCTACAGCTAAGAGACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGAAATAGGAGTTGCAAGGCAACTTGTGTCAATGGGTCACCAAGCTTGTGGGGCATTAGAGCTTTGGAACTACCCAGAGTGGCTCAGAGACCTCGTACCACAAAACATAGATGGCACAGATAGGCCTGATCATGTGGATCTAGCTGCTCTTGAAATTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGGCATTACTGTTGATACCTATCTCCAAGTGGGAAGATTTAACAGATGACAAGGAAGCAATTCAAGTATTGGAAGAGGTATACGGTGATGATGTTGAAGAGCTTGATGTACTGGTAGGCCTCATGGCGGAAAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGGAGGTTAGAAGCTGACAGGTTCTTCACAAGCAACTTTAATGAAGAGACATATACCAAGAAAGGACTGGAATGGGTGAATACAACTGAGAGCCTAAAGGATGTTATTGATCGTCACTATCCTGAAATGTCACACAAGTGGTTAAACTCTTCTAGTGCTTTCTCTGTTTGGGACTCACCACCAAACTCTCAAAATCATATACCTCTCTATCTTCGTGTTCCTCACTAA
>Glyma19g01470.1 sequence type=predicted peptide gene model=Glyma19g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWSAVTDPIRAFFANFLRHFIHKDFHEAVARMTIIDAFLFVIVHSIDKLGIWPRLPVFLGLLYLAIRRRLHQEYNLFNVGTTPVGVRFNHSDFPYRTADGKYNDPFNEVAGSHGTFFGRNILPVDQKKKLLKPDPMVVATKLLARRTYKDTGKQFNVIAASWIQFMIHDWIDHLEDTNQIELIAPREVARQCPLKSFKFYKTKEIPTGFFEIKSGSSNIRTPWWDASAVYGSNGEVLQRVRTFKDGKIKISKDGHLLHNENGTAIAGDIRNSWAGVSTLQALFIQEHNAVCDNLKKHYPQLGDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHVGGVILGGLVGLKRPENHGVTYSLTEEFVTVYRMHSLLPDNLQLRDISATPGPNKSPPLVKEIPMKNLIGLQGEKTLSEIGVARQLVSMGHQACGALELWNYPEWLRDLVPQNIDGTDRPDHVDLAALEIYRDRERSVARYNQFRRALLLIPISKWEDLTDDKEAIQVLEEVYGDDVEELDVLVGLMAEKKIKGFAISETAFVIFLLMATRRLEADRFFTSNFNEETYTKKGLEWVNTTESLKDVIDRHYPEMSHKWLNSSSAFSVWDSPPNSQNHIPLYLRVPH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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