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Report for Sequence Feature Glyma19g01400

Feature Type:gene_model
Chromosome:Gm19
Start:1007374
stop:1014952
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14880AT Annotation by Michelle Graham. TAIR10: Potassium transporter family protein | chr5:4814244-4817667 FORWARD LENGTH=781 SoyBaseE_val: 0ISS
GO:0006813GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transport SoyBaseN/AISS
GO:0071805GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015079GO-mf Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity SoyBaseN/AISS
PF02705PFAM K+ potassium transporter JGI ISS
UniRef100_B9RUB7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RUB7_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N5U5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N5U5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01400 not represented in the dataset

Glyma19g01400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g23960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g010900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01400.1   sequence type=CDS   gene model=Glyma19g01400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTGAGTCTGTGATCCACAGGAACACAATTAAGGAAGAATCATGGAAGACGGTGTTGACTTTGGCCTATCAAAGCTTGGGGGTAGTGTATGGAGACTTGAGCACTTCCCCACTTTACGTTTACAAAAGCGCTTTTGCTGAGGATATTCAGCATTCAGACACCAATGAAGAAATCTATGGAGTGTTGTCTTTTGTGTTCTGGACACTCACACTGATTCCACTGCTCAAGTATGTGTTCATTGTGCTGAGAGCTGATGACAATGGTGAAGGAGGCACCTTTGCACTCTACTCATTGCTGTGTCGCCACGCCCGGGTTAGCTTGCTGCCAAACACTCAGCTTGCAGATGAGGACTTAACTGAGTACACCATGGATAATGGAACTGTTCCTGTTGATAAGAAAAATGTTGGGTTGGGGCTGAAGAACTTGTTGGAGAAACACAGGGTGCTGCAAAGGGTGCTACTTGTTCTTGCCTTGATAGGGACTTGCATGGTTATTGGGGATGGTGTGCTCACACCAGCAATATCTGTTTTTTCTGCTGTGTCAGGATTGGAGCTTTCCATGTCTAAAGAACAGCACAGATATGTGGAGGTTCCAGTGGCTTGTGTAATACTGATATTTTTGTTTGCCCTTCAACATTATGGTACTCATCGTGTGGGGAGTCTCTTTGCACCTGTTGTCTTGACCTGGCTGCTATGTATCAGTGCTATTGGTGTCTATAATATCTTCCATTGGAATCCACATGTTTATGAAGCTCTCTCCCCATATTACATGTTCAAATTTCTGAAGAAGACACAAAAGGGAGGATGGATGTCCTTGGGTGGAATTCTACTGTGTATAACAGGTTCAGAAGCCATGTATGCTGATTTAGGACACTTTTCACAATTGTCAATTAAGATTGCATTCACCTTTTTGGTATACCCTTCTTTAATCCTAGCATATATGGGACAAGCTGCATATCTTTCCAGACATCATTCCCTTGAAAGTGACTATAGAATTGGGTTCTATGTATCTGTACCTGTAAAACTTAGATGGCCTGTTCTTGCAATAGCCATACTTCAAGCTGTGGTTGGAAGTCAAGCTGTCATCACAGGGACTTTCTCCATAATCAAACAATGTTCTGCTATGGGATGTTTCCCCAAAGTTAAAATAATTCACACATCATCCAAAATGCATGGCCAGATTTACATTCCTGAGATCAACTGGAGTTTGATGCTGCTTTGCCTGGCTATTACAGTTGGGTTTAGAGATACTAAACGCATGGGAAATGCAGCAGGCTTGGCTGTCATAACTGTCATGCTGGTGACCACTTGCTTAATGTCTCTAGTTATAGTCTTGTGCTGGCACAAGAACATACTGCTAGCAGTTTGCTTCATATTGTTCTTTGGTTCCATTGAAGCACTCTATTTCTCAGCATCCCTCATCAAGTTCCTTGAGGGGGCTTGGGTCCCCATTGCCCTCTCCCTCATATTTCTCATTTCCATGTATGTGTGGCACTATGGCACATTAAAGAAGTATGAGTTTGATGTTCAAAACAAGGTTCCAATCAACTGGCTCCTCAGTTTAGGCCCCTCTCTAGGCATTGTCAGGGTCAAGGGAATTGGTCTCATACACACTGAGCTTGTATCTGGGATCCCAGCTATTTTCTCCCACTTTGTTACCAATCTACCTGCCTTCCACCAAGTTGTTATCTTCCTCTGCATTAAATCAGTCCAAGTGCCACATGTTAGACCTGAAGAAAGGTTCTTGGTGGGTAGAGTTGGCCCAAAGGAGTATAGACTTTACCGGTGCATAGCGCGGTATGGCTACCGCGACATTCACAAGGATGACATTGAGTTTGAGAGGGATCTTATTTGCAGCATAGCTGAATTCATCAGATCAGATGCATCTGAATATGGCTTAGGATTTGGGAGCTTTGAAGAAGATACAAAGATGACAGTTGTGGGGACTTCAGCATCAAACTTAGAGGGTTCAATAAGGATGACTGAAGATGATGATCAACAAGATTCTCAAATGGAAGAAGGTCCTTCAGAGTTGATGGAGGTTAAGTCTTCTCCTGAGAAAGTGAGGAAGAGAGTGAGGTTTGTTGTGCCAGACAGTCCACAGATTGATTTGGATGCAAGAGAGGAGTTGCTTGAGCTAATGGATGCAAAAGAGGCTGGAATGGCATTCATATTGAGTCACTCATATGTTAGAGCAAAAAGTGGATCAAGCTGGTTGAAAAAAGTTGTTATCAATTATGGATATGATTTCTTAAGGAGAAACTCGAGAGGACCAGCATATGCATTGAGTATACCTCATGCATCTACCTTAGAGGTGGGAATGATCTATCATGTATGA

>Glyma19g01400.1   sequence type=predicted peptide   gene model=Glyma19g01400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLESVIHRNTIKEESWKTVLTLAYQSLGVVYGDLSTSPLYVYKSAFAEDIQHSDTNEEIYGVLSFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARVSLLPNTQLADEDLTEYTMDNGTVPVDKKNVGLGLKNLLEKHRVLQRVLLVLALIGTCMVIGDGVLTPAISVFSAVSGLELSMSKEQHRYVEVPVACVILIFLFALQHYGTHRVGSLFAPVVLTWLLCISAIGVYNIFHWNPHVYEALSPYYMFKFLKKTQKGGWMSLGGILLCITGSEAMYADLGHFSQLSIKIAFTFLVYPSLILAYMGQAAYLSRHHSLESDYRIGFYVSVPVKLRWPVLAIAILQAVVGSQAVITGTFSIIKQCSAMGCFPKVKIIHTSSKMHGQIYIPEINWSLMLLCLAITVGFRDTKRMGNAAGLAVITVMLVTTCLMSLVIVLCWHKNILLAVCFILFFGSIEALYFSASLIKFLEGAWVPIALSLIFLISMYVWHYGTLKKYEFDVQNKVPINWLLSLGPSLGIVRVKGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVIFLCIKSVQVPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDIHKDDIEFERDLICSIAEFIRSDASEYGLGFGSFEEDTKMTVVGTSASNLEGSIRMTEDDDQQDSQMEEGPSELMEVKSSPEKVRKRVRFVVPDSPQIDLDAREELLELMDAKEAGMAFILSHSYVRAKSGSSWLKKVVINYGYDFLRRNSRGPAYALSIPHASTLEVGMIYHV*







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