SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23800 | AT | Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 2B7 | chr1:8412238-8414804 REVERSE LENGTH=534 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004028 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0004029 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2450 | KOG | Aldehyde dehydrogenase | JGI | ISS | |
| PTHR11699 | Panther | ALDEHYDE DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR11699:SF46 | Panther | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00171 | PFAM | Aldehyde dehydrogenase family | JGI | ISS | |
| UniRef100_C7A2A0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial benzaldehyde dehydrogenase n=1 Tax=Antirrhinum majus RepID=C7A2A0_ANTMA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F315 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F315 related cluster n=1 Tax=unknown RepID=UPI000233F315 | SoyBase | E_val: 0 | ISS |
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Glyma19g01390 not represented in the dataset |
Glyma19g01390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g23950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g010800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01390.1 sequence type=CDS gene model=Glyma19g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTATGTTCTCACTGGCATAGAAGTATAAGTGGAATTGGTGCTTCTGCTGCTGCTGATGTGGAGCCTAGCATAGCACCAGTGCAAATTGATCATAGTCAGCTTCTAATTGATGGACAGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCTTTGATCCTAGAACTGGAGATGTAATTGCCAATGTTGCTGAAGGTGACACTGAAGACGTAAATCGTGCTGTTCGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACAGCTTATGAAAGATCGCGTATAATTTTGCGCTTTGCTGATTTATTGGAGAAACACAATGATGAAGTTGCCGCAATTGAAACATGGGATAGTGGGAAGACTTATGAACAGGCTGCTAAGGTTGAAATACCTATGGTGGTACGCTTATTCCGATATTATGCAGGTTGGGTGGATAAAATTCATGGTCTAACAGTTCCGGCTGATGGACCATACCATGTCCAAACTTTGCATGAACCAATTGGTGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGATGGCTGCACCTGCATTAGCTTGTGGTAATACAGTTGTAATAAAAACTTCAGAGCAGGCACCACTTTCTGCCCTTTATGTGTCAAAGCCATTTCTTGAGGCAGGACTTCCTCCTGGTGTTCTGAATGTTATCACTGGCTTTGGTGCTACTGCTGGTGCATCGCTGTGTAGTCATATGGACGTTGATAAGCAATCTGAAGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTGTGCGAGGATGCTGATGTTGATGCAGCTGTTGAGGCTGCACATTTTGCTTTATTTTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGCACATTTGTCCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTCTTAAACGTGTAGTTGGAGACCCTTTCAAAAATGGAGTTGAGCAAGGTCCTCAGATTGATTCTGCGCAATTCGAGAAGATCATGAAGTACATAAGATCAGGCGTTGAAAATGGTGCTACACTGGAATCTGGTGGTCAAAGAATTGGCTCCAAAGGCTATTACATCCAACCCACTGTTTTCTCAAATGTTCAGGACAACATGTTGATAGCAAAAGATGAGATATTTGGTCCAGTACAATCTATCTTGAAATTCAAGGATCTAGAGGAAGTGATAAGAAGAGCCAATGCAACTTCCTATGGCCTGGCTTCTGGAGTTTTTACTCAAAATATGGACACTGCCAACACCTTGATGCGCGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGATGTCTTTGATGCAGCAATACCTTTTGGTGGATATAAGATGAGTGGACAAGGGAGAGTAAGGGGAATCTACAGCCTTAGAAGCTACCTTCAAGTTAAAGCTGTTGTCACTGCTTTGAAGAATCCCGCATGGTTGTAG
>Glyma19g01390.1 sequence type=predicted peptide gene model=Glyma19g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LCSHWHRSISGIGASAAADVEPSIAPVQIDHSQLLIDGQFVDAASGKTFPTFDPRTGDVIANVAEGDTEDVNRAVRAARKAFDEGPWPKMTAYERSRIILRFADLLEKHNDEVAAIETWDSGKTYEQAAKVEIPMVVRLFRYYAGWVDKIHGLTVPADGPYHVQTLHEPIGVAGQIVPWNFPLLIFSWMAAPALACGNTVVIKTSEQAPLSALYVSKPFLEAGLPPGVLNVITGFGATAGASLCSHMDVDKQSEVTLELGGKSPFIVCEDADVDAAVEAAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGDPFKNGVEQGPQIDSAQFEKIMKYIRSGVENGATLESGGQRIGSKGYYIQPTVFSNVQDNMLIAKDEIFGPVQSILKFKDLEEVIRRANATSYGLASGVFTQNMDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGIYSLRSYLQVKAVVTALKNPAWL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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