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Report for Sequence Feature Glyma19g01381

Feature Type:gene_model
Chromosome:Gm19
Start:980674
stop:983415
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g01381
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18500AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:6139263-6141283 FORWARD LENGTH=484 SoyBaseE_val: 3.00E-61ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF806Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9RUB2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RUB2_RICCO SoyBaseE_val: 0ISS
UniRef100_F6HV09UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HV09_VITVI SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g01381
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01381 not represented in the dataset
Glyma19g01381 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g01381 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g010700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g01381
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g01381
>Glyma19g01381.1   sequence type=CDS   gene model=Glyma19g01381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCGGCAACTTCTGAGGCTGTGGATACAGGTTGCAGCCTCAAAATTCAACTTTCACCTTTATTGAATGATTCAAGAAGTGAAGAGGGAGACTGGGATGAAATCCTTCATAACAAGTGCTGTGGAGCAGCATTCGATGCTTACATCTATGCACTCGGTTGGCGGGCAAATCAAACTGGAAAGATTTACTTAGATTCTACTGAGCAAAGAAATTGTCTGTCTAGAATGAAAAGTTTGAATGATGATGTTTTTGGTTGTGGAATTGAGAACCTAACAAGTGGTGCTGGTGGGTGTTCTGACTTGTTGGTTTCTGATGTTAGGAGTAGATTAGGAAATGAGCTTAGAAGTTTAGATGAAAACTGTCAACAGTCATGTTCTTTGTGCCTGAAGACCTGGAATACAATAGGAGGGACAGATTCCAGAAAGACCAATGCCAAAACTGAAAAAATTGAAGCTGATCTCTGTAGAATTGCAGTTCTTGTGACATTGATAAGCAGCAAAATTGAAAATGTGATGTATGTCAAAACAGTTCTGAGATGCCTTGGAGCACAACATATTTATTCAGGTATATGGATTGTGACTGGAGCAATCATAGGGGTTATATTGATAATACTTATCACTGCATGCTTCATGTCTCGTAGATACTTCAGATCAGCCCCACCAAAAAAAGAAGTAACATTTGGAGACATGTTAAGGAAAACTGCCTGTCCTAGAGTTCCTATTAAGGAAGTGTATGCGGCCACAAACCATCTGAATGAAATGAATATCATTGGGAAAGGAACTTCAGGTAAGGTCTATAAGGGTACAATGACAAATAATCTGAATGTTGCAATAAAGCACATAATCAATGATGATGGAAATGTGAACACTTTTGTCAGAGAAATTACAAGCTTATCTCATGTCAGACACCCTAATATTGTTGCTTTGTTGAGTTACTGTGTTGAGGGAGATGAACGTTTTCTGGTTTATGAACTATGTCCCAATGGGAGCCTTTCAGAATGGCTATTTGGCAAGAACAAGGTGCTATCCTGGATACAAAGGCTAGAAATCGCAATTGATTGTGCTAGAGGTCTTTGGTTCTTACATACTTACCAAGGAGGATGCATTGTTCACCGTGATATCAAGCCAACAAATATTCTTCTGGGGTCCAAATTTGAGGCAAAGCTATCAGACTTTGGACTGTCTAAAGTTATTGAGGTGGGCGAAACGTATGTAAGCTCTGAAGTGAGAGGAACATTTGGATATGTTGACCCCGAGTACCAAAGTAACCACCATGTGAATTCATCAGGTGACGTTTACAGCTTTGGAATGGTACTTCTACAAATCCTCTCGGGAAAGAAGGTTATAAATTTGAAACTGAAGAAACCAATGCCACTGAACAAAGTGGCAAAAGCATTCACCAGGGATGGGAGGATAACAGGATTTGCTGACCCTAAACTTCAAGGAGAGTACTCTGAAGAAGCATTTGATTTTGCACTTAAGTTAGCACTATCATGTACAGCCCTCAACCAACAACGTCCATCCATGGAGCAGGTTGTCAAAAGACTAGAAGAGGCTCTGTTCATTTCAAAAGGGAGGAAGGCTTCTACTCCAGAAACTCCAGCTGACAATATTTCTAATCCATAA
Predicted protein sequences of Glyma19g01381
>Glyma19g01381.1   sequence type=predicted peptide   gene model=Glyma19g01381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESATSEAVDTGCSLKIQLSPLLNDSRSEEGDWDEILHNKCCGAAFDAYIYALGWRANQTGKIYLDSTEQRNCLSRMKSLNDDVFGCGIENLTSGAGGCSDLLVSDVRSRLGNELRSLDENCQQSCSLCLKTWNTIGGTDSRKTNAKTEKIEADLCRIAVLVTLISSKIENVMYVKTVLRCLGAQHIYSGIWIVTGAIIGVILIILITACFMSRRYFRSAPPKKEVTFGDMLRKTACPRVPIKEVYAATNHLNEMNIIGKGTSGKVYKGTMTNNLNVAIKHIINDDGNVNTFVREITSLSHVRHPNIVALLSYCVEGDERFLVYELCPNGSLSEWLFGKNKVLSWIQRLEIAIDCARGLWFLHTYQGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKVIEVGETYVSSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGMVLLQILSGKKVINLKLKKPMPLNKVAKAFTRDGRITGFADPKLQGEYSEEAFDFALKLALSCTALNQQRPSMEQVVKRLEEALFISKGRKASTPETPADNISNP*






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