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Report for Sequence Feature Glyma19g01341

Feature Type:gene_model
Chromosome:Gm19
Start:969663
stop:970040
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g01341
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48030AT Annotation by Michelle Graham. TAIR10: hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein | chr3:17725410-17727954 REVERSE LENGTH=349 SoyBaseE_val: 5.00E-14ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22765Panther RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING JGI ISS
PTHR22765:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9RUA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RUA7_RICCO SoyBaseE_val: 8.00E-41ISS
UniRef100_I1N5T8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5T8_SOYBN SoyBaseE_val: 4.00E-88ISS

Expression Patterns of Glyma19g01341
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01341 not represented in the dataset
Glyma19g01341 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01341
ParalogEvidenceComments
Glyma13g23930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01341 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g01341
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g01341
>Glyma19g01341.1   sequence type=CDS   gene model=Glyma19g01341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGTTATTGTAACAGTGGTGTTAATATTTGTTGGATTTGTGTTCCTGGTCCTACTTCATGTTTGTTTTTCCGAGAGAGCTAGGAGAGGATCAATGGTTGAGAGGAGAGCAAATGGGGGAAGAAGCATGTCTATAGATGACTTGGAGAAGCTTCCATGTTATGATTATGTTGACAATTCCAAAGGCAACAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTAATCACAGGAGATAAGTGCAGATTCTTACCTGTGTGCAAGCATAGTTTTCATGCCCAATGTGTGGACGCATGGCTTCTAAAGACACCCATTTGTCCAACTTGCAGGTGTAATGCTCATTCTCATAGTGGAAACCAAGTTGTA
Predicted protein sequences of Glyma19g01341
>Glyma19g01341.1   sequence type=predicted peptide   gene model=Glyma19g01341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVIVTVVLIFVGFVFLVLLHVCFSERARRGSMVERRANGGRSMSIDDLEKLPCYDYVDNSKGNNTSSPVDCAVCLENLITGDKCRFLPVCKHSFHAQCVDAWLLKTPICPTCRCNAHSHSGNQVV






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