Glyma19g01280 - SoyBase

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Report for Sequence Feature Glyma19g01280

Feature Type:	gene_model
Chromosome:	Gm19
Start:	886189
stop:	901065
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g01280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62850	AT	Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein \| chr5:25230204-25231527 REVERSE LENGTH=240	SoyBase	E_val: 4.00E-91	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_B6T9M1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seven-transmembrane-domain protein 1 n=1 Tax=Zea mays RepID=B6T9M1_MAIZE	SoyBase	E_val: 3.00E-90	ISS
UniRef100_I1N5T4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5T4_SOYBN	SoyBase	E_val: 6.00E-178	ISS

Proteins Associated with Glyma19g01280

Locus	Gene Symbol	Protein Name
	SWEET48	sucrose transporter gene 48
	SWEET48	sucrose effluxer gene 48

Expression Patterns of Glyma19g01280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01280 not represented in the dataset	Glyma19g01280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g01280

Paralog	Evidence	Comments
Glyma13g23860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g01280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g009900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g01280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g01280

Limit To All Plant Sequences

>Glyma19g01280.2   sequence type=transcript   gene model=Glyma19g01280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTAATCCAGTAGTTAAAAGCACAACTTAAAACCACCCGTCCAAGCTTCAACACATGTACGTTCTTATCCCAATAATCTGTAGCAGCATCCAAAGCAATAGGATTTCGAATAATAAAACCATTTCTTCTCCTATGCTAGCAATAACATATATTGCACCCATCGCACTTTGATGAGAATGGCCACGTTCTTTGCAGTAATCAGAGGCTCAGAGACTAACTCATCCTTCTCCATTAATTTTATTACTTCACTTTCATTGGTGAACTTTCTCTAAGGCAATTTGTATGATCATCCAGATCCTCTTTCAAAGATTGCTCATCACTGAAATATATATAGCAGAGGGAGACAAACTCAAACCAACCAAAGACTAAAGAAAAGAAAAAAAAGAGCTTCCACAATGGTAAGCGCTGCAATTGCTCGTAACGTCGTCGGCGTAATAGGCAATATCATTTCCTTTGGCTTGTTCTTTTCACCTGCTCCAACTTTCTATGGAATTGTAAAGAAGAAGACGGTGGAGGAGTTCAAGCCAGATCCTTATATAGCAACGGTGTTGAATTGTGCGTTTTGGGTGTTCTATGGAATGCCTTTTGTGCACCCAAACAGCATTTTAGTTGTCACTATCAACAGCGTTGGGCTTGCGTTCGAGTTTGTCTATCTTACCATATATTATGTCTATGCTACCAACAAAGGACGGAAAAAGCTACTGATTTTTCTTCTCATCGAGGTTGTTTTCTTTGCTGCCGTTGCTCTTATAACAATGCTGGCATTGCATGGCACTCGCCAAAGGTCGTTAGTGGTTGGTGTTCTCTCTGATATCTTCAATGTTATGATGTATGTCTCCCCTCTTACAATTATGGCAAAGGTTATAAAAACTAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTGGCTAACTTCCTTAATGGTGCGTGTTGGACAACATATGCTCTCATCCACCCATTTGACCTTTATGTCCTGATCAGCAATGGTATCGGAGCAATCTCTGGGCTTATTCAGCTTATATTGTATGCTTGCTACTGCTCTTGCAAGAGTAAAAATGATGAGGATGGTGATCAAGATTTGAAACCAAGTGGCTTTCAGCTCTCTAACTTAAACGGAAGAGCTGCAGTAGTCTGATGTCACATATATCAACATCCGTTTAAAACCTTTCTTTTTCTTTTTTCTTTTTACTCCTTCTTGACCTTATATTTAATCCTTTCTTTTTCTTTTTTTTTAACTCCTTCTTGACCTTATATTTCTATCTGTCCTTTAAATTTCAATGTCAAATATGACATTTATATAGATATAGATACATATATACGATGGTGTTGCTTTTTATAATATGCGTGTGATGCATACTAGTTAAGCACTAGTTTGGATTTTCATTTTCAAATTTTGGATTGTAGACTGGAATATGTTTATATTTGCTCAGACCATGCATAATTCCCAGCTAAGAGTGAGATCTTTACCAAAGCAACCTTAGTTAGTGTGCGTAGAGTATATTGAGTAACTTTGTTTTTTACTCGTTGCTTGCATGTTAGAAGCTTCATAATAAGTTAGAAAACTGTATTTTATTTTATCGTGATGAATATAGCTCTCAATATTCAAGATAGATTAGACTCACTGATGACTCTTACGATCCATCTC

Coding sequences of Glyma19g01280

Limit To All Plant Sequences

>Glyma19g01280.1   sequence type=CDS   gene model=Glyma19g01280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGCGCTGCAATTGCTCGTAACGTCGTCGGCGTAATAGGCAATATCATTTCCTTTGGCTTGTTCTTTTCACCTGCTCCAACTTTCTATGGAATTGTAAAGAAGAAGACGGTGGAGGAGTTCAAGCCAGATCCTTATATAGCAACGGTGTTGAATTGTGCGTTTTGGGTGTTCTATGGAATGCCTTTTGTGCACCCAAACAGCATTTTAGTTGTCACTATCAACAGCGTTGGGCTTGCGTTCGAGTTTGTCTATCTTACCATATATTATGTCTATGCTACCAACAAAGGACGGAAAAAGCTACTGATTTTTCTTCTCATCGAGGTTGTTTTCTTTGCTGCCGTTGCTCTTATAACAATGCTGGCATTGCATGGCACTCGCCAAAGGTCGTTAGTGGTTGGTGTTCTCTCTGATATCTTCAATGTTATGATGTATGTCTCCCCTCTTACAATTATGGCAAAGGTTATAAAAACTAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTGGCTAACTTCCTTAATGGTGCGTGTTGGACAACATATGCTCTCATCCACCCATTTGACCTTTATGTCCTGATCAGCAATGGTATCGGAGCAATCTCTGGGCTTATTCAGCTTATATTGTATGCTTGCTACTGCTCTTGCAAGAGTAAAAATGATGAGGATGGTGATCAAGATTTGAAACCAAGTGGCTTTCAGCTCTCTAACTTAAACGGAAGAGCTGCAGTAGTCTGA

>Glyma19g01280.2   sequence type=CDS   gene model=Glyma19g01280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAGCGCTGCAATTGCTCGTAACGTCGTCGGCGTAATAGGCAATATCATTTCCTTTGGCTTGTTCTTTTCACCTGCTCCAACTTTCTATGGAATTGTAAAGAAGAAGACGGTGGAGGAGTTCAAGCCAGATCCTTATATAGCAACGGTGTTGAATTGTGCGTTTTGGGTGTTCTATGGAATGCCTTTTGTGCACCCAAACAGCATTTTAGTTGTCACTATCAACAGCGTTGGGCTTGCGTTCGAGTTTGTCTATCTTACCATATATTATGTCTATGCTACCAACAAAGGACGGAAAAAGCTACTGATTTTTCTTCTCATCGAGGTTGTTTTCTTTGCTGCCGTTGCTCTTATAACAATGCTGGCATTGCATGGCACTCGCCAAAGGTCGTTAGTGGTTGGTGTTCTCTCTGATATCTTCAATGTTATGATGTATGTCTCCCCTCTTACAATTATGGCAAAGGTTATAAAAACTAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTGGCTAACTTCCTTAATGGTGCGTGTTGGACAACATATGCTCTCATCCACCCATTTGACCTTTATGTCCTGATCAGCAATGGTATCGGAGCAATCTCTGGGCTTATTCAGCTTATATTGTATGCTTGCTACTGCTCTTGCAAGAGTAAAAATGATGAGGATGGTGATCAAGATTTGAAACCAAGTGGCTTTCAGCTCTCTAACTTAAACGGAAGAGCTGCAGTAGTCTGA

Predicted protein sequences of Glyma19g01280

Limit To All Plant Sequences

>Glyma19g01280.1   sequence type=predicted peptide   gene model=Glyma19g01280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSAAIARNVVGVIGNIISFGLFFSPAPTFYGIVKKKTVEEFKPDPYIATVLNCAFWVFYGMPFVHPNSILVVTINSVGLAFEFVYLTIYYVYATNKGRKKLLIFLLIEVVFFAAVALITMLALHGTRQRSLVVGVLSDIFNVMMYVSPLTIMAKVIKTKSVKYMPFWLSLANFLNGACWTTYALIHPFDLYVLISNGIGAISGLIQLILYACYCSCKSKNDEDGDQDLKPSGFQLSNLNGRAAVV*

>Glyma19g01280.2   sequence type=predicted peptide   gene model=Glyma19g01280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSAAIARNVVGVIGNIISFGLFFSPAPTFYGIVKKKTVEEFKPDPYIATVLNCAFWVFYGMPFVHPNSILVVTINSVGLAFEFVYLTIYYVYATNKGRKKLLIFLLIEVVFFAAVALITMLALHGTRQRSLVVGVLSDIFNVMMYVSPLTIMAKVIKTKSVKYMPFWLSLANFLNGACWTTYALIHPFDLYVLISNGIGAISGLIQLILYACYCSCKSKNDEDGDQDLKPSGFQLSNLNGRAAVV*

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