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Report for Sequence Feature Glyma19g01260
Feature Type: gene_model
Chromosome: Gm19
Start: 870816
stop: 876275
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01480 AT
Annotation by Michelle Graham. TAIR10: cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437
SoyBase E_val: 0 ISS
GO:0000165 GO-bp
Annotation by Michelle Graham. GO Biological Process: MAPK cascade
SoyBase N/A ISS
GO:0006098 GO-bp
Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt
SoyBase N/A ISS
GO:0006364 GO-bp
Annotation by Michelle Graham. GO Biological Process: rRNA processing
SoyBase N/A ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0006636 GO-bp
Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009595 GO-bp
Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus
SoyBase N/A ISS
GO:0009657 GO-bp
Annotation by Michelle Graham. GO Biological Process: plastid organization
SoyBase N/A ISS
GO:0009697 GO-bp
Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process
SoyBase N/A ISS
GO:0009773 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I
SoyBase N/A ISS
GO:0009814 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction
SoyBase N/A ISS
GO:0009862 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009867 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009902 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast relocation
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010103 GO-bp
Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0010207 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosystem II assembly
SoyBase N/A ISS
GO:0010310 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0015995 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process
SoyBase N/A ISS
GO:0016117 GO-bp
Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process
SoyBase N/A ISS
GO:0019288 GO-bp
Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
SoyBase N/A ISS
GO:0019684 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction
SoyBase N/A ISS
GO:0031348 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response
SoyBase N/A ISS
GO:0035304 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation
SoyBase N/A ISS
GO:0042549 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosystem II stabilization
SoyBase N/A ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0042793 GO-bp
Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter
SoyBase N/A ISS
GO:0043900 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0050832 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009534 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid
SoyBase N/A ISS
GO:0009535 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane
SoyBase N/A ISS
GO:0009543 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009579 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: thylakoid
SoyBase N/A ISS
GO:0031977 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen
SoyBase N/A ISS
GO:0003755 GO-mf
Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity
SoyBase N/A ISS
KOG0881
KOG
Cyclophilin type peptidyl-prolyl cis-trans isomerase
JGI ISS
PTHR11071 Panther
CYCLOPHILIN
JGI ISS
PTHR11071:SF75 Panther
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
JGI ISS
PF00160 PFAM
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
JGI ISS
UniRef100_I1N5T2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5T2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_O22636 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Poly(A) polymerase n=1 Tax=Pisum sativum RepID=O22636_PEA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g01260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g01260
Paralog Evidence Comments
Glyma13g23850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g01260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g009700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g01260
Coding sequences of Glyma19g01260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01260.1 sequence type=CDS gene model=Glyma19g01260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCCATCATCCCCTGCCACTACTGTGCTTCCCTCAGTCCCAAATGGTTCAATTCCAACAACACACATTCTAGGCGTTTATCGTACCCACTTCGAGGACTCCGAGGTTTCAATGCTCGTTGCTCTTACCAACCACCCCATCATTCTGAATCTCAGAACAACCATAATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGATATCTATTGCACTGGCAGTTGGGTTAATAACAGGAGTTCCTACATTGGATGGTCCCACCATTGCCCAAGCAGCTAATCCTGTGTTGTCTGATCTCTCTGTTTTGATTTCCGGACCACCGATTAAGGATCCTGGGGCATTGTTGAGATATGCTCTTCCTATTGACAATAAGGCCATTAGAGAAGTGCAAAAGCCACTTGAAGATATCACGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGAAATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTATCCGGTTTAGCTGAATCAAAGAAAGAACATGGCGTTGAACTGCTTAGTAAGCTGGAAGCTGGTATAGATGAGCTTGAACTGATAATACAGGATAGGAATCGAGATGCAGTTGCACCAAAACAGAAAGAGCTTCTTCAGTATGTTGGAGGTGTTGAAGAAGACATTGTTGATGGCTTCCCATTTGAAGTGCCCGAGGAATACCAAAATATGCCTTTATTGAAGGGGAGAGCAGCAGTGGATATGAAAGTCAAGGTTAAAGACAATCCAAACCTGGATGAATGTGTTTTCCACATCGTTCTTGATGGTTATAATGCCCCTGTAACTGCTGGAAATTTTGTTGATTTGGTAGAAAGGCACTTCTATGATGGCATGGAAATCCAAAGAGCGGATGGGTTTGTTGTCCAAACTGGTGATCCTGAAGGTCCTGCTGAGGGTTTTATTGATCCAAGTACAGAGAAAATCAGGACAATACCATTAGAAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTACAATGGCAATGGCAAGAGATGAATTTGAGGACAACTCTGCCTCTAGCCAGATATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCTAGTAATGCCAATATATTGGATGGTCGATATGCCGTCTTTGGCTATGTAACAGAAAATGAGGATAACTTGGCAGATCTCAAAGTTGGTGATGTCATAGAATCCATTAAAGTAGTTTCTGGCCTGGATAATTTGGTGAATCCCACCTACAAGATTGCTGGCTAG
Predicted protein sequences of Glyma19g01260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01260.1 sequence type=predicted peptide gene model=Glyma19g01260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAIIPCHYCASLSPKWFNSNNTHSRRLSYPLRGLRGFNARCSYQPPHHSESQNNHNGRSFSLKQCAISIALAVGLITGVPTLDGPTIAQAANPVLSDLSVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITESLKIAGVKALDSVERNVRQASRTLKQGKTLIVSGLAESKKEHGVELLSKLEAGIDELELIIQDRNRDAVAPKQKELLQYVGGVEEDIVDGFPFEVPEEYQNMPLLKGRAAVDMKVKVKDNPNLDECVFHIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKIRTIPLEITVNGEKAPVYGSTLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSASSQIFWLLKESELTPSNANILDGRYAVFGYVTENEDNLADLKVGDVIESIKVVSGLDNLVNPTYKIAG*