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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g01250

Feature Type:gene_model
Chromosome:Gm19
Start:860821
stop:866111
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01490AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr3:191095-193258 REVERSE LENGTH=411 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004712GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0192 KOG Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs JGI ISS
PTHR23257Panther SERINE-THREONINE PROTEIN KINASE JGI ISS
PTHR23257:SF276Panther SUBFAMILY NOT NAMED JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_B9RUU3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase atmrk1, putative n=1 Tax=Ricinus communis RepID=B9RUU3_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0001B63BCAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B63BCA related cluster n=1 Tax=unknown RepID=UPI0001B63BCA SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01250 not represented in the dataset

Glyma19g01250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g23840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g009500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01250.1   sequence type=CDS   gene model=Glyma19g01250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAGTGAGAGTGGGGGGTATGTGAGAGCGGATCAGATAGATCTGAAAAGCTTGGATGAGCAGCTTCAGAGGCATCTGAGTAGAGCATGGACTATGGAGAAGAACAAGGAGAAGGAGGAAGAAGAAGAGGTTGAAGGAAGGTCCACAAGAAGCAGACAAGAATGGGAGATTGACCCCTCTAAGCTTGTCATCAAGACTGTCATTGCTCGTGGCACTTTTGGCACTGTCCATCGTGGGATTTATGATGGCCAAGATGTTGCAGTTAAGCTCCTTGACTGGGGGGAAGAAGGCCATCGGTCAGATGCTGAAATAGCTTCTTTGCGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGAACATCCTAATGTAACCAAGTTTATTGGGGCAACAATGGGAACATCAGAGCTACAGATACAAACAGAAAATGGTCATATAGGCATGCCGAGTAATGTTTGTTGTGTTGTTGTTGAATATTGTCCTGGGGGTGCACTGAAGTCTTATCTCATTAAAAACCGAAGAAGGAAGCTGGCTTTTAAAGTGGTTGTTCAACTGGCTCTTGACCTTGCAAGAGGGTTGAGCTATCTCCACACAAAGAAGATTGTCCACAGAGATGTTAAAACAGAAAATATGCTTCTGGACAAGACACGAACCTTGAAAATAGCTGATTTTGGAGTAGCTCGTATTGAGGCCTCCAATCCTCATGACATGACAGGTGAAACTGGAACCCTTGGTTACATGGCTCCTGAGGTTCTAAATGGTAATCCATACAATAGAAAGTGTGATGTGTACAGTTTTGGCATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCAGAAGTGACATCAGCTGTTGTACGACAGAATTTGAGGCCAGAGATTCCGCGATGTTGTCCTAGCGCTCTGGCAAATGTGATGAAAAGATGCTGGGATGCGAATCCTGACAAGAGGCCGGAGATGGATGAAGTGGTGACCATGTTGGAAGCTATTGATACTTCAAAGGGTGGAGGTATGATCCCTCATGATCAGCCTCAGGGTTGTTTATGTTTTCGCAGTTATCGAGGACCTTGA

>Glyma19g01250.1   sequence type=predicted peptide   gene model=Glyma19g01250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSESGGYVRADQIDLKSLDEQLQRHLSRAWTMEKNKEKEEEEEVEGRSTRSRQEWEIDPSKLVIKTVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLEHPNVTKFIGATMGTSELQIQTENGHIGMPSNVCCVVVEYCPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHTKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSALANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPHDQPQGCLCFRSYRGP*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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