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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40270 | AT | Annotation by Michelle Graham. TAIR10: HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG2681 | KOG | Metal-dependent phosphohydrolase | JGI | ISS | |
| PTHR11373 | Panther | SAM/HD DOMAIN PROTEIN-RELATED | JGI | ISS | |
| PTHR11373:SF10 | Panther | DGTP TRIPHOSPHOHYDROLASE | JGI | ISS | |
| PF01966 | PFAM | HD domain | JGI | ISS | |
| UniRef100_D7MJA0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Metal-dependent phosphohydrolase HD domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MJA0_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N5T1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5T1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g01240 not represented in the dataset |
Glyma19g01240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g23830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g009400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g01240.2 sequence type=transcript gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAATAAGCATATGTTATTGTTTTTTATTTCCATTTATTTGTTTTTACTAATTAATTATTGTTTTTTAAACTAATTACTAAGTATAACTCATCTTATGTATTAAGTATAATTAATGATATAATGGGTTAATTTGAGCTTAAATAATGTAGAAGAATTAGAATTAGTAGTGAGAGATGATAATGGTGAAGTAGATAAACTACCATGTTAAGTGCTACCTTATGTTATCCACTTAGTTGGTTCTTCTCGGCCACTTCTCTGCTTGACATAGCGACAGGATCATGATTGATTATCTCATAAGAATAGAGAGAGTTGAGAAGAACGTGAAGCGTGAAAGAAAGATAATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAAGGGGAAAAGTTATCATTACTATGATACTATTTTTTTGGCCTTCTGTCTCACCCTATTTTGGTATAACATATTCCATAGTTGAAATATAGTGTAAGTCAACAGAAACCAATGCCTACTTTCAAAGGTTGTATTTGAGTTACCATATCGAAGAGTCAATTACATGTATAGCAATGGTCAAGTGTAACAGTTTCATTTAGCTTTAATTGGCAGTGAGAGCAATCTTTATTTGTCAATGCTAGTTGGCAGTTACAACTTGCAAATGTTTCCCAAATATCTTGTTCAAATTGGACCAGTTTTCATGGACGAGAATGCATCTCTAGTGTGCCCTTCTATACTACTAAGCATTCATTACGTTAATTACGACATTATTGTGTCTAGTTGGAAACAAAAAAA
>Glyma19g01240.1 sequence type=CDS gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAA >Glyma19g01240.2 sequence type=CDS gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTGATTATCTCATAAGAATAGAGAGAGTTGAGAAGAACGTGAAGCGTGAAAGAAAGATAATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAA
>Glyma19g01240.1 sequence type=predicted peptide gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGAYCNGDVSLPPSYDVASGEDPRFCKHVRDNVHGNIYLDSLSLKFIDTEQFQRLRELKQLGFTNMVYPGAVHSRFEHSLGVYWLASQCVEKLKTYQGLELGINRFDIQTVKLAGLLHDVGHGPFSHLFEREFLPQVISGSDWSHEQMSVDMVDYIVDEHHIDVDPQMIRRVKEMILASSEYAPPRSSSEKSFLYDIVANGRNGIDVDKFDYLLRDCRACGLGCNFEFRRLLETMRVLDDEICYRAKDYLTIHKMFVTRADLYRTVYTHPKVKAIELMVVDALVHANSYLGISSNIHNPSEYWKLDDTIIKTIETTPNQELKEARELILRIRRRKLYQFCNEYPVPKDMLDNYKKVTAQDIVCSQKSGGVTLKEEDVAICNVKIDLTRGKHNPLESIHFFKDYESDEKFTIPDDRISHLLPTSYQDMIVKVYAKKPELVEAISEAFENFQLKTYGIKAQAHSTPQKKRRYNPFI* >Glyma19g01240.2 sequence type=predicted peptide gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIDYLIRIERVEKNVKRERKIMGAYCNGDVSLPPSYDVASGEDPRFCKHVRDNVHGNIYLDSLSLKFIDTEQFQRLRELKQLGFTNMVYPGAVHSRFEHSLGVYWLASQCVEKLKTYQGLELGINRFDIQTVKLAGLLHDVGHGPFSHLFEREFLPQVISGSDWSHEQMSVDMVDYIVDEHHIDVDPQMIRRVKEMILASSEYAPPRSSSEKSFLYDIVANGRNGIDVDKFDYLLRDCRACGLGCNFEFRRLLETMRVLDDEICYRAKDYLTIHKMFVTRADLYRTVYTHPKVKAIELMVVDALVHANSYLGISSNIHNPSEYWKLDDTIIKTIETTPNQELKEARELILRIRRRKLYQFCNEYPVPKDMLDNYKKVTAQDIVCSQKSGGVTLKEEDVAICNVKIDLTRGKHNPLESIHFFKDYESDEKFTIPDDRISHLLPTSYQDMIVKVYAKKPELVEAISEAFENFQLKTYGIKAQAHSTPQKKRRYNPFI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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