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Report for Sequence Feature Glyma19g01240

Feature Type:gene_model
Chromosome:Gm19
Start:848256
stop:856538
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40270AT Annotation by Michelle Graham. TAIR10: HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473 SoyBaseE_val: 0ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008081GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG2681 KOG Metal-dependent phosphohydrolase JGI ISS
PTHR11373Panther SAM/HD DOMAIN PROTEIN-RELATED JGI ISS
PTHR11373:SF10Panther DGTP TRIPHOSPHOHYDROLASE JGI ISS
PF01966PFAM HD domain JGI ISS
UniRef100_D7MJA0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Metal-dependent phosphohydrolase HD domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MJA0_ARALL SoyBaseE_val: 0ISS
UniRef100_I1N5T1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5T1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g01240 not represented in the dataset

Glyma19g01240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g23830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g009400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g01240.2   sequence type=transcript   gene model=Glyma19g01240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATAAGCATATGTTATTGTTTTTTATTTCCATTTATTTGTTTTTACTAATTAATTATTGTTTTTTAAACTAATTACTAAGTATAACTCATCTTATGTATTAAGTATAATTAATGATATAATGGGTTAATTTGAGCTTAAATAATGTAGAAGAATTAGAATTAGTAGTGAGAGATGATAATGGTGAAGTAGATAAACTACCATGTTAAGTGCTACCTTATGTTATCCACTTAGTTGGTTCTTCTCGGCCACTTCTCTGCTTGACATAGCGACAGGATCATGATTGATTATCTCATAAGAATAGAGAGAGTTGAGAAGAACGTGAAGCGTGAAAGAAAGATAATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAAGGGGAAAAGTTATCATTACTATGATACTATTTTTTTGGCCTTCTGTCTCACCCTATTTTGGTATAACATATTCCATAGTTGAAATATAGTGTAAGTCAACAGAAACCAATGCCTACTTTCAAAGGTTGTATTTGAGTTACCATATCGAAGAGTCAATTACATGTATAGCAATGGTCAAGTGTAACAGTTTCATTTAGCTTTAATTGGCAGTGAGAGCAATCTTTATTTGTCAATGCTAGTTGGCAGTTACAACTTGCAAATGTTTCCCAAATATCTTGTTCAAATTGGACCAGTTTTCATGGACGAGAATGCATCTCTAGTGTGCCCTTCTATACTACTAAGCATTCATTACGTTAATTACGACATTATTGTGTCTAGTTGGAAACAAAAAAA

>Glyma19g01240.1   sequence type=CDS   gene model=Glyma19g01240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAA

>Glyma19g01240.2   sequence type=CDS   gene model=Glyma19g01240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGATTATCTCATAAGAATAGAGAGAGTTGAGAAGAACGTGAAGCGTGAAAGAAAGATAATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAA

>Glyma19g01240.1   sequence type=predicted peptide   gene model=Glyma19g01240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAYCNGDVSLPPSYDVASGEDPRFCKHVRDNVHGNIYLDSLSLKFIDTEQFQRLRELKQLGFTNMVYPGAVHSRFEHSLGVYWLASQCVEKLKTYQGLELGINRFDIQTVKLAGLLHDVGHGPFSHLFEREFLPQVISGSDWSHEQMSVDMVDYIVDEHHIDVDPQMIRRVKEMILASSEYAPPRSSSEKSFLYDIVANGRNGIDVDKFDYLLRDCRACGLGCNFEFRRLLETMRVLDDEICYRAKDYLTIHKMFVTRADLYRTVYTHPKVKAIELMVVDALVHANSYLGISSNIHNPSEYWKLDDTIIKTIETTPNQELKEARELILRIRRRKLYQFCNEYPVPKDMLDNYKKVTAQDIVCSQKSGGVTLKEEDVAICNVKIDLTRGKHNPLESIHFFKDYESDEKFTIPDDRISHLLPTSYQDMIVKVYAKKPELVEAISEAFENFQLKTYGIKAQAHSTPQKKRRYNPFI*

>Glyma19g01240.2   sequence type=predicted peptide   gene model=Glyma19g01240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDYLIRIERVEKNVKRERKIMGAYCNGDVSLPPSYDVASGEDPRFCKHVRDNVHGNIYLDSLSLKFIDTEQFQRLRELKQLGFTNMVYPGAVHSRFEHSLGVYWLASQCVEKLKTYQGLELGINRFDIQTVKLAGLLHDVGHGPFSHLFEREFLPQVISGSDWSHEQMSVDMVDYIVDEHHIDVDPQMIRRVKEMILASSEYAPPRSSSEKSFLYDIVANGRNGIDVDKFDYLLRDCRACGLGCNFEFRRLLETMRVLDDEICYRAKDYLTIHKMFVTRADLYRTVYTHPKVKAIELMVVDALVHANSYLGISSNIHNPSEYWKLDDTIIKTIETTPNQELKEARELILRIRRRKLYQFCNEYPVPKDMLDNYKKVTAQDIVCSQKSGGVTLKEEDVAICNVKIDLTRGKHNPLESIHFFKDYESDEKFTIPDDRISHLLPTSYQDMIVKVYAKKPELVEAISEAFENFQLKTYGIKAQAHSTPQKKRRYNPFI*







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