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Report for Sequence Feature Glyma19g01240
Feature Type: gene_model
Chromosome: Gm19
Start: 848256
stop: 856538
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g01240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G40270 AT
Annotation by Michelle Graham. TAIR10: HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473
SoyBase E_val: 0 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008081 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
KOG2681
KOG
Metal-dependent phosphohydrolase
JGI ISS
PTHR11373 Panther
SAM/HD DOMAIN PROTEIN-RELATED
JGI ISS
PTHR11373:SF10 Panther
DGTP TRIPHOSPHOHYDROLASE
JGI ISS
PF01966 PFAM
HD domain
JGI ISS
UniRef100_D7MJA0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Metal-dependent phosphohydrolase HD domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MJA0_ARALL
SoyBase E_val: 0 ISS
UniRef100_I1N5T1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5T1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g01240
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g01240
Paralog Evidence Comments
Glyma13g23830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g01240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g009400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g01240
Transcripts of Glyma19g01240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01240.2 sequence type=transcript gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAAAATAAGCATATGTTATTGTTTTTTATTTCCATTTATTTGTTTTTACTAATTAATTATTGTTTTTTAAACTAATTACTAAGTATAACTCATCTTATGTATTAAGTATAATTAATGATATAATGGGTTAATTTGAGCTTAAATAATGTAGAAGAATTAGAATTAGTAGTGAGAGATGATAATGGTGAAGTAGATAAACTACCATGTTAAGTGCTACCTTATGTTATCCACTTAGTTGGTTCTTCTCGGCCACTTCTCTGCTTGACATAGCGACAGGATCATGATTGATTATCTCATAAGAATAGAGAGAGTTGAGAAGAACGTGAAGCGTGAAAGAAAGATAATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAAGGGGAAAAGTTATCATTACTATGATACTATTTTTTTGGCCTTCTGTCTCACCCTATTTTGGTATAACATATTCCATAGTTGAAATATAGTGTAAGTCAACAGAAACCAATGCCTACTTTCAAAGGTTGTATTTGAGTTACCATATCGAAGAGTCAATTACATGTATAGCAATGGTCAAGTGTAACAGTTTCATTTAGCTTTAATTGGCAGTGAGAGCAATCTTTATTTGTCAATGCTAGTTGGCAGTTACAACTTGCAAATGTTTCCCAAATATCTTGTTCAAATTGGACCAGTTTTCATGGACGAGAATGCATCTCTAGTGTGCCCTTCTATACTACTAAGCATTCATTACGTTAATTACGACATTATTGTGTCTAGTTGGAAACAAAAAAA
Coding sequences of Glyma19g01240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g01240.1 sequence type=CDS gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAA
>Glyma19g01240.2 sequence type=CDS gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTGATTATCTCATAAGAATAGAGAGAGTTGAGAAGAACGTGAAGCGTGAAAGAAAGATAATGGGTGCTTATTGCAACGGAGACGTTTCGTTGCCACCATCCTACGACGTCGCTTCAGGAGAAGATCCCAGGTTCTGCAAGCACGTTCGCGACAACGTCCATGGCAACATTTATCTCGATTCCCTCAGTTTGAAGTTCATTGACACTGAGCAGTTTCAGAGGCTTCGCGAGTTGAAACAACTAGGTTTTACGAACATGGTTTATCCAGGTGCTGTGCATTCCAGATTTGAGCATTCTCTTGGTGTGTATTGGCTTGCCAGTCAATGTGTGGAAAAGCTTAAAACTTATCAAGGCTTGGAGCTTGGTATAAATAGATTTGATATTCAAACAGTGAAACTTGCAGGACTTCTGCATGATGTGGGACATGGCCCTTTCAGCCACTTGTTTGAGCGCGAGTTTCTTCCCCAAGTTATCAGTGGTTCTGATTGGTCACATGAACAAATGTCAGTCGATATGGTTGATTATATTGTTGATGAACACCATATTGATGTTGACCCTCAAATGATAAGAAGAGTCAAGGAGATGATACTGGCAAGCTCTGAATATGCTCCTCCAAGGAGCTCAAGTGAGAAAAGTTTCTTGTATGATATTGTTGCAAATGGCCGAAATGGAATTGATGTTGACAAATTTGATTATCTTCTCCGTGACTGTCGAGCTTGTGGTCTAGGATGCAACTTTGAATTTCGAAGGTTATTGGAGACAATGCGGGTTTTGGATGATGAGATTTGTTATCGTGCTAAGGACTACCTCACCATCCACAAAATGTTTGTCACCCGTGCTGATCTTTATAGAACAGTTTATACACATCCAAAAGTGAAGGCAATAGAGCTTATGGTGGTTGATGCACTTGTTCACGCTAATAGTTATTTGGGGATTTCGTCTAACATACATAATCCTTCTGAGTACTGGAAGCTGGATGACACAATAATTAAAACTATTGAGACAACTCCAAATCAAGAACTAAAGGAGGCCAGGGAGTTGATCCTGCGCATTCGAAGGAGGAAATTGTATCAGTTTTGTAATGAGTATCCTGTACCGAAGGATATGCTGGACAATTATAAGAAGGTCACTGCTCAAGATATTGTTTGTTCTCAGAAGAGTGGTGGAGTTACACTGAAAGAGGAGGATGTAGCTATTTGTAATGTCAAAATTGATTTGACTCGTGGAAAGCATAATCCTCTGGAAAGCATCCACTTTTTCAAGGATTACGAAAGTGATGAGAAATTTACAATACCTGATGATCGCATAAGCCACTTGCTACCTACATCTTACCAAGATATGATAGTTAAGGTGTACGCCAAAAAGCCAGAACTGGTGGAGGCAATTTCAGAGGCTTTTGAAAATTTTCAGTTGAAAACATATGGCATCAAAGCACAGGCACATTCAACGCCACAGAAGAAGCGTCGTTACAATCCATTTATATAA
Predicted protein sequences of Glyma19g01240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g01240.1 sequence type=predicted peptide gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAYCNGDVSLPPSYDVASGEDPRFCKHVRDNVHGNIYLDSLSLKFIDTEQFQRLRELKQLGFTNMVYPGAVHSRFEHSLGVYWLASQCVEKLKTYQGLELGINRFDIQTVKLAGLLHDVGHGPFSHLFEREFLPQVISGSDWSHEQMSVDMVDYIVDEHHIDVDPQMIRRVKEMILASSEYAPPRSSSEKSFLYDIVANGRNGIDVDKFDYLLRDCRACGLGCNFEFRRLLETMRVLDDEICYRAKDYLTIHKMFVTRADLYRTVYTHPKVKAIELMVVDALVHANSYLGISSNIHNPSEYWKLDDTIIKTIETTPNQELKEARELILRIRRRKLYQFCNEYPVPKDMLDNYKKVTAQDIVCSQKSGGVTLKEEDVAICNVKIDLTRGKHNPLESIHFFKDYESDEKFTIPDDRISHLLPTSYQDMIVKVYAKKPELVEAISEAFENFQLKTYGIKAQAHSTPQKKRRYNPFI*
>Glyma19g01240.2 sequence type=predicted peptide gene model=Glyma19g01240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIDYLIRIERVEKNVKRERKIMGAYCNGDVSLPPSYDVASGEDPRFCKHVRDNVHGNIYLDSLSLKFIDTEQFQRLRELKQLGFTNMVYPGAVHSRFEHSLGVYWLASQCVEKLKTYQGLELGINRFDIQTVKLAGLLHDVGHGPFSHLFEREFLPQVISGSDWSHEQMSVDMVDYIVDEHHIDVDPQMIRRVKEMILASSEYAPPRSSSEKSFLYDIVANGRNGIDVDKFDYLLRDCRACGLGCNFEFRRLLETMRVLDDEICYRAKDYLTIHKMFVTRADLYRTVYTHPKVKAIELMVVDALVHANSYLGISSNIHNPSEYWKLDDTIIKTIETTPNQELKEARELILRIRRRKLYQFCNEYPVPKDMLDNYKKVTAQDIVCSQKSGGVTLKEEDVAICNVKIDLTRGKHNPLESIHFFKDYESDEKFTIPDDRISHLLPTSYQDMIVKVYAKKPELVEAISEAFENFQLKTYGIKAQAHSTPQKKRRYNPFI*